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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(R1AB_SARS2) | A 1 (A) | polymer(polypeptide(L)) [572 aa] | Helicase :R1AB_SARS2 | |
2 | b | C 1 (A) | non-polymer(VWJ) | N-(propan-2-yl)-1H-benzimidazol-2-amine | 5585E 5611G 5614H 5648Y 5766R (identity: 100.0 %/96.6 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5rlv_A_1 identity=96.6% |
queryA 5325:AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDVTQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGS:5424 :********************************************************************************************** : 5rlv_A_1 1:AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDVTQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKXXXXXX: 100 SecStr : EEETTTEEEES EESSSSS B HHHHHHHHTTSS EESSS SS STT GGGEEEETTEEEETTT SS EESEETTEE TT ------: ExpBur :eebebbbeeeebbbbbeebeeebebbbebbeebbeebebeebbbeeebebebeebeeeebeebebbeeebebeeeeeeebeebbeeeebebeee------: queryA 5425:DNVTDFNAIATCDWTNAGDYILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNYVFTGYRVTKNSKVQIGEYTF:5524 : *********************************************************************************** *******: 5rlv_A_1 101:XXVTDFNAIATCDWTNAGDYILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNYVFTGYXXXXXXXXQIGEYTF: 200 SecStr :-- HHHHHHHH S BHHHHHHHHHS HHHHHHHHHHHHHHHHHHHTTS EEEEEE SSS EEEEE TTS SSSS EEE -------- EEEE: ExpBur :--eeebbebbebebbebebbebbbebeeebbbbbbbbbebbbbeeeeebbebebeeeeeeeebebeeeeeeeebeebeebebbbe--------ebeebeb: queryA 5525:EKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTLVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP:5624 :** **********************************************************************************************: 5rlv_A_1 201:EKXXXXDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTLVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP: 300 SecStr :E ---- BEEEESS TT EEEE S SS B SS S SS GGGGGGHHHHHHHHTBSEEEEE TTSSHHHHHHHHHHHSS: ExpBur :ee----eebebeeeeeeebeeeeebebeeeebeebebebbbeeeeeeeeeebeeeeebeeebeebeeebeebbebbbbbbbbbbbbebebbbbbbbebbe: Contact : b b b queryA 5625:SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIG:5724 :****************************************************************************************************: 5rlv_A_1 301:SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIG: 400 SecStr :SS EEEE SSHHHHHHHHHHHHHHS GGGEEE SS S SSEES TTSSEEE GGG SEEEEEEEEE GGG HHHHHHHHHHEEEEEEEEEE: ExpBur :ebbbbbbbeebebbbebbeebeebbeeeebbbbebeeeeeebbeebeeeeeeebbbbbbbebbeebebebbbbbbbbebbbbbbbbbbeebebebbbbbb: Contact : b queryA 5725:DPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFL:5824 :****************************************************************************************************: 5rlv_A_1 401:DPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFL: 500 SecStr : TTS TT BS GGGS HHHHHHHHT SEE EESSS HHHHHHHHHHHSTT EESS S EEEEE EEETTEEE HHHHHHHHHHH: ExpBur :bbbbbebebebeeeeebebebbbbbbeebeeeeeebebeebebbbbbbbebbbebbbeeebeeeeeeeeebbbbeeeeeeeeeeeebbbeebbbbbeebb: Contact : b queryA 5825:TRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEI:5916 :********************************************************************************************: 5rlv_A_1 501:TRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEI: 592 SecStr :HT GGGGG EEEES HHHHHHHHHHH EEEHHHHTT EEEEEEE SHHHH HHHHHHHHTTEEEEEEEEES HHHHHH SEE : ExpBur :eeeeebeebbbbbbbbbbbebbeeebebeeebbeebbeeeeebbbbbbbbeeeebeeebbbbbbbbbbeebbbbbbbbeebbeebebeeeee: |