[pdbjlvh2]Protein Model on 5rlf_A_1_C

Protein Model on 5rlf_A_1_C_1 (TEMPLATE: 5rlf )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(R1AB_SARS2)	A 1 (A)	polymer(polypeptide(L)) [572 aa]	Helicase :R1AB_SARS2
2	b		C 1 (A)	non-polymer(NY7)	N-(2-methoxy-5-methylphenyl)glycinamide	5791K 5797K 5907D 5908K 5909L 5910Q 5911F (identity: 100.0 %/96.6 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5rlf_A_1 identity=96.6%

queryA      5325:AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDVTQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGS:5424
                :**********************************************************************************************      :
5rlf_A_1       1:AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDVTQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKXXXXXX: 100
SecStr          :  B  TTT   BS EESSSTT  B  HHHHHHHHTTSS   EESSS SS  STT     GGGEEEETTEEEETTT  SS EESEETTEE  TT ------:    
ExpBur          :eebebbeeeeebbbebbebeeebebbbebbeebbeebebeebbbeeebebebeebeeeebeebebbeebbebeeeeeeebeebbeeeebebeee------:    

queryA      5425:DNVTDFNAIATCDWTNAGDYILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNYVFTGYRVTKNSKVQIGEYTF:5524
                :  ***********************************************************************************        *******:
5rlf_A_1     101:XXVTDFNAIATCDWTNAGDYILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNYVFTGYXXXXXXXXQIGEYTF: 200
SecStr          :-- HHHHHHHH  S BHHHHHHHHHS HHHHHHHHHHHHHHHHHHHHTS  EEEEEE SSSEEEEEE SSS     STTS EEE --------   EEEE:    
ExpBur          :--eeebbebbebebbebebbebbbebeeebbbbbbbbbebbbbeeeeebbebebeeeeeeeebeeeeeeeeeebeebeebebbbe--------ebbebbb:    

queryA      5525:EKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTLVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP:5624
                :**    **********************************************************************************************:
5rlf_A_1     201:EKXXXXDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTLVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP: 300
SecStr          :E ----  EEEEESS     TT EEEE         S SS    B SS  S    S   GGGGGGHHHHHHHHTBSEEEEE  TTSSHHHHHHHHHHHST:    
ExpBur          :ee----eebebbeeeeeebeeeeebebeeeebeebebebbbeeeeeeeeeebeeeeebeeebeebeeebeebbebbbbbbbbbbebebebbbbbbbebbe:    

queryA      5625:SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIG:5724
                :****************************************************************************************************:
5rlf_A_1     301:SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIG: 400
SecStr          :T  EEEEESSHHHHHHHHHHHHHHS GGGEEEE  SS  S    SSEET TTSSEEEEEGGG  SEEEEEEEE  GGG  HHHHHHHHHHEEEEEEEEEE:    
ExpBur          :ebbbbbbbeebebbeebbeebeeebeeeebbbbeeeeeeeebbeebeeeeeeeebbbbbbebbeeeebebbbbbebbebebbbbbbbbeebebebbbbbb:    

queryA      5725:DPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFL:5824
                :****************************************************************************************************:
5rlf_A_1     401:DPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFL: 500
SecStr          : TTS     TT  BS   GGGS HHHHHHHHT  SEE  EE SS HHHHHHHHHHHSTT  EESS   S EEEEE     EEETTEEE HHHHHHHHHHH:    
ExpBur          :bbbbbbbebebbeeeebebebbbbbbeebeeeeeebebeebebbbbbbbebbbebbbeeebeeeeeeeeebbbbeeeeeeeeeeeebbbeebbbbbeebb:    
Contact         :                                                                  b     b                           

queryA      5825:TRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEI:5916
                :********************************************************************************************:
5rlf_A_1     501:TRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEI: 592
SecStr          :HH GGGGG EEEES HHHHHHHHHHH   EEEHHHHTT  EEEEEEE    SHHHH HHHHHHHHTTEEEEEEEEES HHHHHH  SEE   :    
ExpBur          :eeeeebeebbbbbbbbbbbebbeeebebeeebbeebbeeebebbbbbbbbeeeebbeebbbbbbbbbbeebbbbbbbbeebbeebebeeeee:    
Contact         :                                                                                  bbbbb

Protein Model on 5rlf_A_1_C_1 (TEMPLATE: 5rlf )

Input Residue Numbers for Focused Sites