CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(R1AB_SARS2) | C 1 (C) | polymer(polypeptide(L)) [514 aa] | Polyprotein 1ab :Q1T6X8_CVHSA | |
2 | b | T 1 (C) | non-polymer(PEG) | DI(HYDROXYETHYL)ETHER | 6134L (identity: 100.0 %/92.8 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5nfy_C_1 identity=92.8% |
queryA 5926:AENVTGLFKDCSKVITGLHPTQAPTHLSVDTKFKTEGLCVDIPGIPKDMTYRRLISMMGFKMNYQVNGYPNMFITREEAIRHVRAWIGFDVEGCHATREA:6025 :************* **************** ******************************************************************* *: 5nfy_C_1 8:AENVTGLFKDCSKIITGLHPTQAPTHLSVDIKFKTEGLCVDIPGIPKDMTYRRLISMMGFKMNYQVNGYPNMFITREEAIRHVRAWIGFDVEGCHATRDA: 107 SecStr : TT B B S TTT SSSTTS GGGEETTEE TTS S EEEE TT SB HHHHHHTGGGEEEEEEEEEEE SSB: ExpBur :eeeeeeeeeebbeeeebbbeebbeeeeebbeebeeeeeeeeeeeeeeeeebebbbbbeeeeeeeeeeeeeebebeeeebeebbbbbbbbbbbbbebbeeb: queryA 6026:VGTNLPLQLGFSTGVNLVAVPTGYVDTPNNTDFSRVSAKPPPGDQFKHLIPLMYKGLPWNVVRIKIVQMLSDTLKNLSDRVVFVLWAHGFELTSMKYFVK:6125 :*************************** *** * ** ************************************** ************************: 5nfy_C_1 108:VGTNLPLQLGFSTGVNLVAVPTGYVDTENNTEFTRVNAKPPPGDQFKHLIPLMYKGLPWNVVRIKIVQMLSDTLKGLSDRVVFVLWAHGFELTSMKYFVK: 207 SecStr : S EEEEEEEESSS EEE EEEEEESSSEEEEE EE SSSTTGGGSGGGTS HHHHHHHHHHHHHHHHTTT SS EEEESSHHHHHHHHTTTB : ExpBur :eebebbbbbbbebeeebbbbbbbbbbbeeeeeeeebebebbeeeeeeebeebbeeeeebeebbeebbebbbeebeebbebbbbbbbeeebbbbbbebbbe: queryA 6126:IGPERTCCLCDRRATCFSTASDTYACWHHSIGFDYVYNPFMIDVQQWGFTGNLQSNHDLYCQVHGNAHVASCDAIMTRCLAVHECFVKRVDWTIEYPIIG:6225 :*********** ******* ******* ** *************************** ******************************** ******: 5nfy_C_1 208:IGPERTCCLCDKRATCFSTSSDTYACWNHSVGFDYVYNPFMIDVQQWGFTGNLQSNHDQHCQVHGNAHVASCDAIMTRCLAVHECFVKRVDWSVEYPIIG: 307 SecStr : S B SSSSSB EEETTTTEEE TTT TT EE S EEEESGGGT SS HHHHHHTT SSS SSHHHHHHHHHHHHHHTTTTS TT S: ExpBur :ebeeeebeebeebbbbbbeeeeebbbbeebeebbbbbbbbbbbbeeeeeeeebeebbeeebeeeeeeeebbbebebbbbbbbbbbbeeebeeebebeeee: Contact : b queryA 6226:DELKINAACRKVQHMVVKAALLADKFPVLHDIGNPKAIKCVPQADVEWKFYDAQPCSDKAYKIEELFYSYATHSDKFTDGVCLFWNCNVDRYPANSIVCR:6325 :*** * *********** ************************* ************************** * ********************* ****: 5nfy_C_1 308:DELRVNSACRKVQHMVVKSALLADKFPVLHDIGNPKAIKCVPQAEVEWKFYDAQPCSDKAYKIEELFYSYAIHHDKFTDGVCLFWNCNVDRYPANAIVCR: 407 SecStr :SHHHHHHHHHHHHHHHHHHHHHHT SEEEEES SS SSSS SSEEEEEESS STTGGGEEE HHHHTTT SSEEEEES SS SSEEEEE: ExpBur :ebeebeebbeebbebbbebbbebeebebbbbbebbebeebbeeeebebebbbeeeeeeeeeebeebebeeeebeeebeebbbbbbebebeebbebbbbbb: queryA 6326:FDTRVLSNLNLPGCDGGSLYVNKHAFHTPAFDKSAFVNLKQLPFFYYSDSPCESHGKQVVSDIDYVPLKSATCITRCNLGGAVCRHHANEYRLYLDAYNM:6425 :************************************ **************** **************************** *******: 5nfy_C_1 408:FDTRVLSNLNLPGCDGGSLYVNKHAFHTPAFDKSAFTNLKQLPFFYYSDSPCEXXXXXXXXXXXYVPLKSATCITRCNLGGAVCRHHANEYRQYLDAYNM: 507 SecStr :E TT STTEEE SSS EEEESSSEEEE GGGGTTEEE EEE ----------- TTEEETT SSS SHHHHHHHHHHHHHHH: ExpBur :bbbeeeeebbbebbeebbbbbbebbebbeeeeeebbeebeebeebbbbeeeee-----------eeeeeeeebbbeeeeeebebeebeeebeebeebbee: queryA 6426:MISAGFSLWVYKQFDTYNLWNTFTR:6450 :********* ***************: 5nfy_C_1 508:MISAGFSLWIYKQFDTYNLWNTFTR: 532 SecStr :HHHTTEEEEEETT SHHHHTTS : ExpBur :beeebbbbbbbeebeeeebeebbee: |