Protein Model on 5nfy_A_1_E_1
(TEMPLATE: 
5nfy
)Protein Model on 5nfy_A_1_E_1
(TEMPLATE: 5nfy
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(queryA) | A 1 (A) | polymer(polypeptide(L)) [512 aa] | Polyprotein 1ab :Q1T6X8_CVHSA | |
| 2 | b | E 1 (M) | polymer(polypeptide(L)) [132 aa] | Polyprotein 1ab :Q1T6X8_CVHSA | 4V 5T 7L 8F 9K 10D 19H 20P 21T 22Q 23A 24P 25T 26H 27L 29V 35T 38L 39C 40V 41D 47K 51Y 55I 59G 60F 61K 62M 63N 64Y 65Q 66V 67N 69Y 124Y 126D 127T 128P(E) 129N 130N 131T 192L 195M 196K 199V 200K 201I 217F 224Y 237Y (identity: 98.0 %/92.7 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5nfy_A_1 identity=92.7% |
queryA 3:NVTGLFKDCSKVITGLHPTQAPTHLSVDTKFKTEGLCVDIPGIPKDMTYRRLISMMGFKMNYQVNGYPNMFITREEAIRHVRAWIGFDVEGCHATREAVG: 102
:*********** **************** ******************************************************************* ***:
5nfy_A_1 10:NVTGLFKDCSKIITGLHPTQAPTHLSVDIKFKTEGLCVDIPGIPKDMTYRRLISMMGFKMNYQVNGYPNMFITREEAIRHVRAWIGFDVEGCHATRDAVG: 109
SecStr : STT B B S TTTT SSGGGS GGGEETTEE TTS S EEEE TT SB HHHHHHT SSEEEEEEEEEEE SSB S:
ExpBur :eeeeeeeebbeeeebbbeebbeeeeebbeebeeeeeeeeeeeeeeeeebebbbbbeeeeeeeeeeeeeebebeeeebbeebbbbbbbbbbbbebbeebee:
Contact : bb bbbb bbbbbbbbb b b bbbb b b b bbbbbbbbb b
queryA 103:TNLPLQLGFSTGVNLVAVPTGYVDTPNNTDFSRVSAKPPPGDQFKHLIPLMYKGLPWNVVRIKIVQMLSDTLKNLSDRVVFVLWAHGFELTSMKYFVKIG: 202
:************************* *** * ** ************************************** **************************:
5nfy_A_1 110:TNLPLQLGFSTGVNLVAVPTGYVDTENNTEFTRVNAKPPPGDQFKHLIPLMYKGLPWNVVRIKIVQMLSDTLKGLSDRVVFVLWAHGFELTSMKYFVKIG: 209
SecStr : EEEEEEEESSS EEEB EEEEEESSSEEEEE EE SSSTTGGGSGGGSS B HHHHHHHHHHHHHHHHTTT SS EEEESSHHHHHHHHTTTB :
ExpBur :bebbbbbbbebeeebbbbbbbbbebeeeeeeeebebeebeeeeeeebeebbeeeeebeebbeebbebbbeebeebeebbbbbbbeeebbbbbbebbbeeb:
Contact : b bbbbbb b bb bbb
queryA 203:PERTCCLCDRRATCFSTASDTYACWHHSIGFDYVYNPFMIDVQQWGFTGNLQSNHDLYCQVHGNAHVASCDAIMTRCLAVHECFVKRVDWTIEYPIIGDE: 302
:********* ******* ******* ** *************************** ******************************** ********:
5nfy_A_1 210:PERTCCLCDKRATCFSTSSDTYACWNHSVGFDYVYNPFMIDVQQWGFTGNLQSNHDQHCQVHGNAHVASCDAIMTRCLAVHECFVKRVDWSVEYPIIGDE: 309
SecStr :S B SSS SB EEETTTTEEE TTT SS EE S EEEESGGGT SS HHHHHHTT SSS SSHHHHHHHHHHHHHHTTTTS TT SS :
ExpBur :eeeebeebeebbbbbbeeeeebbbbeebeebbbbbbbbbbbbeeeeeeeebeebbeeebeeeeeeeebbbebebbbbbbbbbbbeeebeeebebeeeeeb:
Contact : b b b
queryA 303:LKINAACRKVQHMVVKAALLADKFPVLHDIGNPKAIKCVPQADVEWKFYDAQPCSDKAYKIEELFYSYATHSDKFTDGVCLFWNCNVDRYPANSIVCRFD: 402
:* * *********** ************************* ************************** * ********************* ******:
5nfy_A_1 310:LRVNSACRKVQHMVVKSALLADKFPVLHDIGNPKAIKCVPQAEVEWKFYDAQPCSDKAYKIEELFYSYAIHHDKFTDGVCLFWNCNVDRYPANAIVCRFD: 409
SecStr :HHHHHHHHHHHHHHHHHHHHHS SEEEEET SS SSTT SEEEEEESS STT TTEEE HHHHTTT SSEEEEES SS SSEEEEEE :
ExpBur :eebbebbeebbebbbebbbebeebebbbbbebbebeebbeeeebebebbbeebeeeeeeebeebebbeeebeeebeebbbbbbebebeebbebbbbbbbb:
queryA 403:TRVLSNLNLPGCDGGSLYVNKHAFHTPAFDKSAFVNLKQLPFFYYSDSPCESHGKQVVSDIDYVPLKSATCITRCNLGGAVCRHHANEYRLYLDAYNMMI: 502
:********************************** **************** **************************** *********:
5nfy_A_1 410:TRVLSNLNLPGCDGGSLYVNKHAFHTPAFDKSAFTNLKQLPFFYYSDSPCEXXXXXXXXXXXYVPLKSATCITRCNLGGAVCRHHANEYRQYLDAYNMMI: 509
SecStr :TT SSSEEE STT EEEESSSEEEE GGGGTT EE EEE S ----------- SSEEESS SSS HHHHHHHHHHHHHHHHHH:
ExpBur :beeeeebbbebbeebbbbbbebbebbeebeeebbeebeebebbbbbeeeee-----------eeeeeeeebbbebbeeeeebeebbeebeebeebbeebe:
queryA 503:SAGFSLWVYKQFDTYNLWNTFTR: 525
:******* ***************:
5nfy_A_1 510:SAGFSLWIYKQFDTYNLWNTFTR: 532
SecStr :HTTEEEEE TT THHHHTTT :
ExpBur :eebbbbbbbeebeeeebbeebee:
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[assembly_id:1]
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