#WARNING:no index is registered index "YP_009725308.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725308.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein. [pdbjlvh2]Protein Model on 5rme_A_1_C_1

Protein Model on 5rme_A_1_C_1 (TEMPLATE: 5rme )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(queryA) A 1 (B) polymer(polypeptide(L)) [585 aa] Helicase :R1AB_SARS2
2 b C 1 (B) non-polymer(RYM) 4-(benzimidazol-1-ylmethyl)benzenecarbonitrile 128E 129R 236S 237A 238P 388N (identity: 100.0 %/98.8 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5rme_A_1 identity=98.8%
queryA         2:VGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDVTQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSD: 101
                :****************************************************************************************************:
5rme_A_1       2:VGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDVTQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSD: 101
SecStr          : EE TTT  EES EESSSTT  B  HHHHHHHHTTSS   EESSSB S  STT     GGGEEE SSSEEEGGG  SS EESB SS B SS SSS    S:    
ExpBur          :eeebbebebebbbebbebeeebebbbbbbeebbeebebeebbbeeebebebeeeeeeebeebebbeeebebeeeeeeeeeebbeeeebebeebeeeebee:    

queryA       102:NVTDFNAIATCDWTNAGDYILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNYVFTGYRVTKNSKVQIGEYTFE: 201
                :****************************************************************************************************:
5rme_A_1     102:NVTDFNAIATCDWTNAGDYILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNYVFTGYRVTKNSKVQIGEYTFE: 201
SecStr          :  HHHHHHHH  S BHHHHHHHHHS HHHHHHHHHHHHHHHHHHHHTS  EEEEE  SSSEEEEEE TTS     STTS EEEEEE SSSEEEEEEE EE:    
ExpBur          :ebeebbebbebebbebebbeebbebeeebbbbbbbbbebebbeeeeebbebebeeeeeebebebebeeeeeebebbeebebbbbbeeeeeeeebeebebe:    
Contact         :                          bb                                                                        

queryA       202:KGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTLVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYPS: 301
                :**    **********************************************************************************************:
5rme_A_1     202:KGXXXXAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTLVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYPS: 301
SecStr          :E ---- EEE  SS     TT EEE          S SS    B SS  S    SS  TTTGGGTTHHHHTTSBSEEEEE  TTS HHHHHHHHHHHSTT:    
ExpBur          :ee----ebebeeeeeeebeeebbbebbeeebeebebebbbeeeeeeeeeebeeeeeeeeebeebeeebeebbebbbbbbbbbbebebebbbbbbbebbee:    
Contact         :                                  bbb                                                               

queryA       302:ARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGD: 401
                :***********************************   **************************************************************:
5rme_A_1     302:ARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPAXXXVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGD: 401
SecStr          :  EEEE SSHHHHHHHHHHHHTTS GGGEEEE   ---     SSEES TTSSEEEE STT  SEEEEEEEE  GGG  HHHHHHHHHHEEEEEEEEEE :    
ExpBur          :bbbbbbbeeeebbbebbeebeebbeeeebbbbeee---eebbeebeeeeeebebbbbbbebbbebebebbbbbebbebbbbbbbbbbeebebebbbbbbb:    
Contact         :                                                                                      b             

queryA       402:PAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLT: 501
                :****************************************************************************************************:
5rme_A_1     402:PAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLT: 501
SecStr          :TTS     TT  BS   GGGT HHHHHHHHT  SEE  EESSS HHHHHHHHHHHSTT  EESS   S EEEEE     EEETTEEE HHHHHHHHHHHH:    
ExpBur          :bbbbebebebbeeeebebebbbbbbebbeeeeeebebeebebbbbbbbebbbebbbeeebeeeeeeeeebbbbeeeeeeeeeeebbbbeebbbbbeebbe:    

queryA       502:RNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIP: 593
                :********************************************************************************************:
5rme_A_1     502:RNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIP: 593
SecStr          :H GGGGG EEEES HHHHHHHHHHH   EEEHHHHTT  EEEEEEE    STTTT HHHHHHHHTTEEEEEEEEES HHHHHH  SEE    :    
ExpBur          :eeeebeebbbbbbbbbbbebbeeebebeeeebeebbeeeeebbbbbbbbeeeebbbebbbbbbbbbbeebbbbbbbbeebbeebebeeeeee:    


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