#WARNING:no index is registered index "YP_009725307.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725307.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein. [pdbjlvh2]Protein Model on 7bw4_A_1_B_1

Protein Model on 7bw4_A_1_B_1 (TEMPLATE: 7bw4 )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(queryA) A 1 (A) polymer(polypeptide(L)) [811 aa] RNA-directed RNA polymerase :R1AB_SARS2
2 b B 1 (B) polymer(polypeptide(L)) [115 aa] Non-structural protein 8 :R1AB_SARS2 270L 271L 272K 273Y 323P 324T 325S 326F 328P 329L 330V 331R 332K 339P 340F 344T 368F 371L 372L 375A 378P 379A 380M 381H 382A 383A 384S 385G 386N 387L 388L 389L 391K 402T 403N 404N 405V 407F 509W 514L 518S 666M (identity: 100.0 %/97.7 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7bw4_A_1 identity=97.7%
queryA        31:VYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQR------------: 118
                :********************                                                                                :
7bw4_A_1      22:VYRAFDIYNDKVAGFAKFLK--------------------------------------------------------------------XXXXXXXXXXXX:  53
SecStr          : EEEEEEESSS EEEEEEE --------------------------------------------------------------------------------:    
ExpBur          :eebbebeeeeebbbbbeeee--------------------------------------------------------------------------------:    

queryA       119:--------------------------------------------------------LTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDW: 162
                :                                                        ********************************************:
7bw4_A_1      54:XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDW: 153
SecStr          :--------------------------------------------------------  SSBHHHHHHHHHS  TTS HHHHHHHHHTTSS HHHHHSTTS:    
ExpBur          :--------------------------------------------------------ebebbbbbbbbbbbebeeeebebbeebbeeeebeeeebbeeeeb:    

queryA       163:YDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLT: 262
                :****************************************************************************************************:
7bw4_A_1     154:YDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLT: 253
SecStr          :S SSSS  SHHHHHHHHHHHHHHHTSSHHHHHHHTTTTEEEE  GGGBBSSS B    S EE  TT  EEE HHHHHHHGGGGTSS SHHHH STTS TT:    
ExpBur          :bbbbeeeebeebbbebbeebbebbeebeebbeeeeeebeebebbbbbbbbebebeeeeeeeeeeeeebebebbbbbbbbbbbbbbbebbebbbbeeeeee:    

queryA       263:KPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLH: 362
                :****************************************************************************************************:
7bw4_A_1     254:KPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLH: 353
SecStr          :S      SS    HHHHHHHHHHHSTT SS   SSGGG SSHHHHHHHHHHHHHHHTTS TTSSEEEEEEEEETTEEEEEEEEEE SSS EEE S   TT:    
ExpBur          :eeeeeeeeeeeebbeebeebbeebbebbeeebbbebeebeebbbbbbbbbbbbbbbebbbeebbbebeeebebeeeeeebbbbbbbebbbbbebeeeeee:    
Contact         :       bbbb                                                 bbbb bbbbb      bb   b                  

queryA       363:SSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPT: 462
                :****************************************************************************************************:
7bw4_A_1     354:SSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPT: 453
SecStr          :B    HHHHHHHHH SHHHHHSS     SS SS B   SSSS     B   EE HHHHHHHHHTT S SS S     B   B SHHHHHHHHHHHS    :    
ExpBur          :eeeeeeeeebbbebbbbebeeeeeeeebeebebebebbeeeeeeeeebeeeeebeebeeebeeeebeeeeeebeeebebeebebebebebbeebeebbeb:    
Contact         :     b  bb  b  bbbbbbbbbbbb b          bbbb b                                                       

queryA       463:MCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSI: 562
                :****************************************************************************************************:
7bw4_A_1     454:MCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSI: 553
SecStr          :   SHHHHHHHHHHHHHTTT       TTS     TTS   TTTTTS  HHHHHHHS HHHHHHHHHHHTT     EEEEEE  S BSSS   EEEE  H:    
ExpBur          :bbbbbbbbbbbbbbbebbeebeebebebeeeeeeeeeeebbbbbeeeeebeebbeebeeeebeebbebbeebbbbbbbbbebeeeeeeeeebebebbbbb:    
Contact         :                                              b    b   b                                            

queryA       563:CSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQV: 662
                :****************************************************************************************************:
7bw4_A_1     554:CSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQV: 653
SecStr          :HHHHHHHHHHHHHHHHHHT SSSSB  S  STTTHHHHHHHHHHTT SSEEEE    TTHHHH  HHHHHHHHHHHHHT SSS  HHHHHHHHHHHHHHH:    
ExpBur          :bbbbbbbbbbbebbeebbeeeeebbbbeeeebebbbeebbeebbeebeeeebbbbebeebebbbbbbbbbbbbbbbbbbbeeebeeeebbbbbbbbbbbb:    

queryA       663:LSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDA: 762
                :****************************************************************************************************:
7bw4_A_1     654:LSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDA: 753
SecStr          :TS EEE SS EEE  S   SSSHHHHHHHHHHHHHHHHHHHHHHHHSS TTS   SHHHHHHHHHHHHHHS SS  HHHHHHHHHHHHHHEEEEEETTEE:    
ExpBur          :bbbbbbbebbbbebebbbbeeeebbebbbbbbbbbbbbbbbbbbbbeebbeebeeeebbebbbebbeebbeeeeeeeebbeebbebbeebbbbbbeebeb:    
Contact         :   b                                                                                                

queryA       763:VVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSL: 862
                :****************************************************************************************************:
7bw4_A_1     754:VVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSL: 853
SecStr          :EEEEEHHHHHHTSS  HHHHHHHHHHHHS    GGG  EES SSS  S BTTBEEEEEE SS EEEEEE  HHHHHHHHHEE SSSSS HHHHHHHHHHH:    
ExpBur          :bbbbbbebbeeebbbebebbbbbbbbbbbbbbeeeebbebeebeebbeebeebebbebeeeeeebbbbbbebbebbbbbbbbeeebeeeeeebbeebbeb:    

queryA       863:AIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPH: 928
                :*********************************                   **************:
7bw4_A_1     854:AIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELXXXXXXXXXXXXXXXXXXXYWEPEFYEAMYTPH: 919
SecStr          :HHHTSGGGGSS HHHHHHHHHHHHHHHHHHHH -------------------  STHHHHGGGS  :    
ExpBur          :bbebbbbeeeeeeeebebbebbbebbeebeeee-------------------eeeeeebeebbeee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123