#WARNING:no index is registered index "YP_009724389.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009724389.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein. [pdbjlvh2]Protein Model on 7l1f_A_1_D_1

Protein Model on 7l1f_A_1_D_1 (TEMPLATE: 7l1f )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(queryA) A 1 (A) polymer(polypeptide(L)) [832 aa] RNA-directed RNA polymerase :R1AB_SARS2
2 b D 1 (P) polymer(polyribonucleotide) RNA (5'-R(P*CP*UP*AP*AP*GP*AP*AP*GP*CP*UP*AP*UP*U*(F86)*(F86)*(F86)*(F86))-3') 4947R 5014C 5015D 5074S 5079T 5080A 5083N 5150L 5151S 5152D 5205C 5206S 5228R 5241K 5246L 5250R 5253S (identity: 100.0 %/92.7 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7l1f_A_1 identity=92.7%
queryA      4424:YRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTMADLVYAL:4523
                :*******************                                 *****************                  *************:
7l1f_A_1       1:YRAFDIYNDKVAGFAKFLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETIYNLLKDCPAVAKHDXXXXXXXXXXXXXXXXXXLTKYTMADLVYAL: 100
SecStr          :  EEEEE SS EEEEE   --------------------------------- TTTTTSTTSTTB    ------------------  SS HHHHHHTT:    
ExpBur          :eebbbbeeeebbbbbeeee---------------------------------eebeeebeeeebbeeee------------------eeebbbbbbbbbb:    

queryA      4524:RHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGV:4623
                :****************************************************************************************************:
7l1f_A_1     101:RHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGV: 200
SecStr          :TS  TTS HHHHHHHHHTTS  SSSSSSSS S TTT TTHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTEEEE  GGGB SSS B    S EE  TT   :    
ExpBur          :bebeeeebeebeebbeeeebbeeebbeeeebbbbeebeebeebbeebbeebbebbeebbebbeebeeebbebebebbbbbbebebeeeeebeeeeeeebe:    

queryA      4624:PVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVR:4723
                :****************************************************************************************************:
7l1f_A_1     201:PVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVR: 300
SecStr          :EE HHHHHHHHHHHHHHTTTSSSSBSSS SSS B    TT     HHHHHHHHHHSTT SS   SSSSS  SSSHHHHHHHHHHHHTTTS TTS EE   :    
ExpBur          :bebbbbbbbbbbbbbbbebbebbbbeeeeeeeeeeeeeeeeeebeebbeebbeebbeebeeebebebeebeebebbbbbbbbbbbbbebbeeebbeebee:    

queryA      4724:KIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFKE:4823
                :****************************************************************************************************:
7l1f_A_1     301:KIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFKE: 400
SecStr          :EEEETTEEEE   EEE SSS EEE S   SB SS  HHHHHHHHH THHHHTTSEE    SSS  EEEESSS          EE HHHHHHHTTTT   S:    
ExpBur          :ebebeeeeeebbbbbbbebbbbbebeeeeeeeeeeeebeebbeebbbeebeeeeeeeebeebebebebbeeeeeeeeebeeeeebeebeebbeeeeeeee:    

queryA      4824:GSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYT:4923
                :****************************************************************************************************:
7l1f_A_1     401:GSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYT: 500
SecStr          :SSS S   B     TTHHHHHHGGGGG       SHHHHHHHHHGGGGS S       GGG     S S   BTGGGT  TTHHHHSS HHHHHHHHHHT:    
ExpBur          :eeeeebeeeeeeeeeebebebbeebeebeebbbbbbbbebbbbbbeebbeebebbbbebeeeeeeeeeeebbbbbeeebebeebeeebeeeebeebbeeb:    

queryA      4924:KRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLR:5023
                :****************************************************************************************************:
7l1f_A_1     501:KRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLR: 600
SecStr          :TT     BBB       BSSS      B  HHHHHHHHHHHHHHHHHHTT SSSSB  S  STTTHHHHHHHHHTSS SSEEE     TTSTT   HHHH:    
ExpBur          :bebbbbbbbebeeeeeeeeeeebebebebbbbbbbbbebbbbebeeebeeeeeebbbeeeeeeebbbeebbeebbeeeeebebbbbebbebebbbbbbbb:    
Contact         :                       b                                                                  bb        

queryA      5024:IMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECL:5123
                :****************************************************************************************************:
7l1f_A_1     601:IMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECL: 700
SecStr          :HHHHHHTT   TTT  HHHHHHHHHHHHHHHTS  BBSSSSEE   SS  SS TTHHHHHHHHHHHHHHHHHHHHHHTS TTT   HHHHHHHHHHHHHH:    
ExpBur          :bbbbbbbbeebeeebeeeeebbbbbbbbbbbbebebbbeebbbebebbbbeebebbeebbbbbbbbbbbbbbbbbbbebbbeebeeeebeebbeebbebb:    
Contact         :                                                  b    bb  b                                        

queryA      5124:YRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPY:5223
                :****************************************************************************************************:
7l1f_A_1     701:YRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPY: 800
SecStr          :HT  S  HHHHHHHHHHHHHHEEEEEETTEEEEEEETTTTTTTSS  HHHHHHHHHHTS     TTT   B  SSS  S SSS EE  EEETTEEE  EE:    
ExpBur          :beeeeeeeebbeebeebbeeebbbbbeeebbbbbbbeeeeeeebbbeeebbbbbbbbbbbbbbeeeebbebeeeeebbeebeebbbbebeeeeeebbbbb:    
Contact         :                          bbb                                                    bb                 

queryA      5224:PDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHT:5321
                :****************************************************************               *******************:
7l1f_A_1     801:PDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELXXXXXXXXXXXXXXXNTSRYWEPEFYEAMYTPHT: 898
SecStr          :  HHHHHHHHHEES SGGGSHHHHHHHHHHHHHHT TTTT SSHHHHHHHHHHHHHHHHHHHH ---------------  S TTSHHHHHHHT S  :    
ExpBur          :beebebbbbbbbbeeeeeeebeebeeebeebbbebbbbeeeeeeeeeebbebbbebbeebeeee---------------eeeeeeeeeebeebbeeee:    
Contact         :    b            b    b   b  b                                                                      


Input Residue Numbers for Focused Sites

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