#WARNING:no index is registered index "YP_009724389.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009724389.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | A 1 (A) | polymer(polypeptide(L)) [814 aa] | SARS-CoV-2 RNA-dependent RNA polymerase nsp12 :R1AB_SARS2 | |
2 | b | D 1 (P) | polymer(polyribonucleotide) | RNA (5'-R(P*CP*UP*AP*CP*GP*CP*AP*GP*UP*G)-3') | 4891D 4905R 5150L 5151S 5152D 5205C 5206S 5228R 5232A 5241K 5246L 5250R 5253S 5257D (identity: 100.0 %/97.8 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7b3d_A_1 identity=97.8% |
queryA 4423:VYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQ-------------:4509 :******************** : 7b3d_A_1 34:VYRAFDIYNDKVAGFAKFLK-------------------------------------------------------------------XXXXXXXXXXXXX: 66 SecStr : EEEEEEESSS EEEEEEE --------------------------------------------------------------------------------: ExpBur :eeebebeeeeebbbbbebee--------------------------------------------------------------------------------: queryA 4510:------------------------------------------------------RLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWY:4555 : **********************************************: 7b3d_A_1 67:XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWY: 166 SecStr :------------------------------------------------------ SSBHHHHHHHHHS BTTB HHHHHHHHHTTSS HHHHHSTT S: ExpBur :------------------------------------------------------eebebbbbbbbbbbbbbeeeebeebeebbeebebbeeebbeeeebb: queryA 4556:DFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTK:4655 :****************************************************************************************************: 7b3d_A_1 167:DFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTK: 266 SecStr : TTT TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEE B GGGBBTTS B SS EE STT B HHHHHHHHHHHHHHTGGGGGGBGGG SSS: ExpBur :bbbebeebbebbeebbeebbebbbebbebbeebeeebbebbbbbbbbbbebebeeeeeeeeeeeeebebebbbbbbbbbbbbbbbebbebbbbeeeeeee: queryA 4656:PYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHS:4755 :************************************************************************************************** : 7b3d_A_1 267:PYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLXX: 366 SecStr : B TT HHHHHHHHHHHSTT S SSGGG SSHHHHHHHHHHHHHHHTTS GGGSEEEEEEEEETTEEEEEEEEEEETTTEEEE TT --: ExpBur :eeeeeeeeeeebbebbeebbeebbebbeeebbbbbeebeebbbbbbbbbbbbbbbebbeeebbbebeeebeeeeeeeebbbbbbbebbbbbebeeeee--: queryA 4756:SRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTM:4855 : *************************************************************************************************: 7b3d_A_1 367:XXXSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTM: 466 SecStr :--- HHHHHHHHH HHHHHHHSEE TT SSEEEEESSSS B EE HHHHHHHHHTT S TT S B B TTHHHHHHHGGGG : ExpBur :---eeeeebbeebbbbebeeebeebebeebebebebbeeeeeeeeebeeeeebeebeebbeeeebbeeebebeeebebeeeeeebbbebbbebebbbebb: queryA 4856:CDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSIC:4955 :****************************************************************************************************: 7b3d_A_1 467:CDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSIC: 566 SecStr : HHHHHHHHHHHHHTTSS GGG S SSSB TTGGGT BHHHHHHHS HHHHHHHHHHHTTS EEEEEE BSSS EEEE HH: ExpBur :bbbbbbbbbbbbbbebbeebebbebebeebebeeeeeebbbbbeeeeebeebbeebeeeebeebbebbbebbbbbbbbbeeeeebbeeeebebebebbbb: Contact : b b queryA 4956:STMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVL:5055 :****************************************************************************************************: 7b3d_A_1 567:STMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVL: 666 SecStr :HHHHHHHHHHHHHHHHHT SSSB TT STTTHHHHHHHHHHTT SSEEEEEE TTHHHH HHHHHHHHHHHHGGGTTTS HHHHHHHHHHHHHHTT: ExpBur :bbbbbebbbbebbebbeeeeebbbbbebeebebbbeebbeebbeebeeeebbbbebeebebbbbbbbbbbbbbbbbbbbeeebeeeebbbbbbbbbbbbb: queryA 5056:SEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAV:5155 :****************************************************************************************************: 7b3d_A_1 667:SEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAV: 766 SecStr :S EEEETTEEEE S TTSTTHHHHHHHHHHHHHHHHHHHHHHHS SSS HHHHHHHHHHHHHHHT S HHHHHHHHHHHHHHEEEEEETTEEE: ExpBur :bbbbbbebbbbebebbbbeebebbebbbbbbbbbbbbbbbbbbbbbbebeebeeeebeebbbebbebbbeeeeeeeebbeebeebbeebbbbbbebebbb: Contact : bbb queryA 5156:VCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLA:5255 :****************************************************************************************************: 7b3d_A_1 767:VCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLA: 866 SecStr :EEEEHHHHHTTSS HHHHHHHHHHTT GGG EEES TTT S BTTEEEEEEEETTEEEEEEEE HHHHHHHHHEESSGGGSSSTHHHHHHHHHH: ExpBur :bbbbeebbeeebbbeeebbbbbbbbbbbbbbeeeebbebeeeeebbeebeebebbebebeeeebbbbbbebbebbbbbbbbeeeeeeeeeebbeebbebb: Contact : bb b b b b b b queryA 5256:IDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHT:5321 :********************************* ********************: 7b3d_A_1 867:IDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTXXXXXXXXXXXXXDNTSRYWEPEFYEAMYTPHT: 932 SecStr :HHHGGGGGSSSHHHHHHHHHHHHHHHHHHHHH ------------- TTHHHHSTHHHHHHTSTT : ExpBur :bebbbbeebeeeebbebbebbbebbeebeeeee-------------eebeeebeeebbeebbeeee: Contact : b |