#WARNING:no index is registered index "YP_009724389.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009724389.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein. [pdbjlvh2]Protein Model on 7b3b_A_1_D_1

Protein Model on 7b3b_A_1_D_1 (TEMPLATE: 7b3b )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(queryA) A 1 (A) polymer(polypeptide(L)) [814 aa] RNA-directed RNA polymerase nsp12 :R1AB_SARS2
2 b D 1 (P) polymer(polyribonucleotide) DNA/RNA (5'-R(P*CP*UP*AP*CP*GP*CP*G)-D(P*(RMP))-R(P*UP*G)-3') 4905R 5151S 5152D 5153D 5205C 5206S 5207Q 5228R 5232A 5241K 5250R 5253S 5254L 5257D (identity: 100.0 %/97.8 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7b3b_A_1 identity=97.8%
queryA      4423:VYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQ-------------:4509
                :********************                                                                                :
7b3b_A_1      34:VYRAFDIYNDKVAGFAKFLK-------------------------------------------------------------------XXXXXXXXXXXXX:  66
SecStr          : EEEEEEESSS EEEEEEE --------------------------------------------------------------------------------:    
ExpBur          :eeebbbbeeeebbbbbebee--------------------------------------------------------------------------------:    

queryA      4510:------------------------------------------------------RLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWY:4555
                :                                                      **********************************************:
7b3b_A_1      67:XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWY: 166
SecStr          :------------------------------------------------------   SSBHHHHHHHHHS BTTB HHHHHHHHHTTSS HHHHHSTTSS:    
ExpBur          :------------------------------------------------------eebebbbbbbbbbbbbbeeeebeebeebbeebebbeeebbeeeebb:    

queryA      4556:DFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTK:4655
                :****************************************************************************************************:
7b3b_A_1     167:DFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTK: 266
SecStr          : TTT TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEE B  GGGBBTTS B   SS EE STT    B HHHHHHHHHHHHHTTGGGGGGBGGG SSS:    
ExpBur          :bbbebeebbebbeebbbebbebbeebbebbeebeeebeebbbbbbbbbbebebebeeebeeeeeeebebebbbbbbbbbbbbbbbebbebbbbeeeeeee:    

queryA      4656:PYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHS:4755
                :**************************************************************************************************  :
7b3b_A_1     267:PYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLXX: 366
SecStr          : B    TT    HHHHHHHHHHHSTT  S   SSGGG SSHHHHHHHHHHHHHHHTTS SSSSEEEEEEEEETTEEEEEEEEEEETTTEEEE TT   --:    
ExpBur          :eeeeeeeeeeebbebbeebbeebbebbebebbbbbeebeebbbbbbbbbbbbbbbebbeeebbbebeeebebeeeeeebbbbbbbebbbbbebeeeee--:    

queryA      4756:SRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTM:4855
                :   *************************************************************************************************:
7b3b_A_1     367:XXXSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTM: 466
SecStr          :--- HHHHHHHHHSHHHHHHTSEE   TT SS EEEESSSS     B   EE HHHHHHHHHTT S TT S     B   B TTHHHHHHHGGGG     :    
ExpBur          :---eeeeebbbebbbbebeeebeebebeebebebebbeeeeeeeeebeeeeebeebeebbeeeebbeeeeebebebebeebeeebbbebbbebebbbebb:    

queryA      4856:CDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSIC:4955
                :****************************************************************************************************:
7b3b_A_1     467:CDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSIC: 566
SecStr          :  HHHHHHHHHHHHHTTSSS      GGG   S SSSB  TTGGGT BHHHHHHHS HHHHHHHHHHHTTS    EEEEEE    BSSS   EEEE  HH:    
ExpBur          :bbbbbbbbbbbbbbebbeebebbebebeebeeeeeeeebbbbbeeeeebeebbeebeeeebeebbebbbebbbbbbbbbebeeebeeeeebebebebbbb:    
Contact         :                                                 b                                                  

queryA      4956:STMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVL:5055
                :****************************************************************************************************:
7b3b_A_1     567:STMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVL: 666
SecStr          :HHHHHHHHHHHHHHHHHT  SSSB TT  STTTHHHHHHHHHTTT SSEEEEE   TTHHHH  HHHHHHHHHHHHTT TTT  HHHHHHHHHHHHHHTT:    
ExpBur          :bbbbbebbbbebbebbeeeeebbbbbebebeebbbbebbeebbeebeeeebbbbebbbbebbbbbbbbbbbbbbbbeebeeebeeeebbbbbbbbbbbbb:    

queryA      5056:SEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAV:5155
                :****************************************************************************************************:
7b3b_A_1     667:SEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAV: 766
SecStr          :T EEESSSEEEE  SS  SSSTTHHHHHHHHHHHHHHHHHHHHHHHS SSS   HHHHHHHHHHHHHHHT  S  HHHHHHHHHHHHHHEEEEE SS EE:    
ExpBur          :bbbbbbebbbbbbebbbbeebebeebbbbbbbbbbbbbbbbbbbbbbebeebeeeebbebbbebbebbbeeeeeeeebbeebbebbeebbbbbbebeebb:    
Contact         :                                                                                               bbb  

queryA      5156:VCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLA:5255
                :****************************************************************************************************:
7b3b_A_1     767:VCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLA: 866
SecStr          :EEEEHHHHHHTSS  HHHHHHHHHHTT     GGG EEES TTT  S BTTEEEEEEEETTEEEEEEEE HHHHHHHHHEESSSTTSSSSHHHHHHHHHH:    
ExpBur          :bbbbeebbeeebbbebebbbbbbbbbbbbbbeeeebbeeeeeeebbeebeebebbebebeeeebbbbbbebbebbbbbbbbeeeeebeeeebbeebbebb:    
Contact         :                                                 bbb                    b   b        b        b  bb 

queryA      5256:IDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHT:5321
                :*********************************             ********************:
7b3b_A_1     867:IDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTXXXXXXXXXXXXXDNTSRYWEPEFYEAMYTPHT: 932
SecStr          :HHHGGGGGSSSHHHHHHHHHHHHHHHHHHHHH ------------- TTHHHHSTHHHHHTTSTT :    
ExpBur          :bebbbbeebeeeebbebbebbbebbeebeeeee-------------eebeeebeeeebeebbeeee:    
Contact         : b                                                                                                  


Input Residue Numbers for Focused Sites

ex) 2,15,123