#WARNING:no index is registered index "YP_009724389.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009724389.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein. [pdbjlvh2]Protein Model on 5rma_B_1_H_1

Protein Model on 5rma_B_1_H_1 (TEMPLATE: 5rma )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(queryA) B 1 (B) polymer(polypeptide(L)) [585 aa] Helicase :R1AB_SARS2
2 b H 1 (B) non-polymer(JHJ) N-(4-methoxyphenyl)-N'-pyridin-4-ylurea 5526K 5807D 5814R 5841S 5844A 5845V 5848K 5849I (identity: 100.0 %/98.8 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5rma_B_1 identity=98.8%
queryA      5326:VGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDVTQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSD:5425
                :****************************************************************************************************:
5rma_B_1       2:VGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDVTQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSD: 101
SecStr          : EE TTT  EES EESSSTT  B  HHHHHHHHHHSS   EESSSBS   STT     GGGEEEETTEEEETTT  SS EESEETTEE  TTTTS    T:    
ExpBur          :eeebbebebebbbebbebeeebebbbbbbeebbeebebeebbbeeebebebeeeeeeebeebbbbeeebebeeeeeeeeeebbeeeebebeeeeeeeeee:    

queryA      5426:NVTDFNAIATCDWTNAGDYILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNYVFTGYRVTKNSKVQIGEYTFE:5525
                :****************************************************************************************************:
5rma_B_1     102:NVTDFNAIATCDWTNAGDYILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNYVFTGYRVTKNSKVQIGEYTFE: 201
SecStr          :TTHHHHHHHH  S BHHHHHHHHHS HHHHHHHHHHHHHHHHHHHHTS  EEEEE  SSSEEEEEE SSS     STT EEEEEEE SSSEEEEEEEEEE:    
ExpBur          :ebeebbebbebebbebebbebbbebeeebbbbbbbbbebebbeeeeebbebebeeeeeebebebebeeeeeebeebeebebbbbbeeeeeeeebeebebe:    

queryA      5526:KGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTLVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYPS:5625
                :**    **********************************************************************************************:
5rma_B_1     202:KGXXXXAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTLVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYPS: 301
SecStr          :E ---- EEEEESS     TT EEEE         S SS    B SS  S    S   TTTGGGHHHHHHHHTBSEEEEE  TTS HHHHHHHHHHHSTT:    
ExpBur          :ee----ebebeeeeeeebeeebbbebbeeebeebebebbbeeeeeeeeeebeeeeeeeeebeebeeebeebbebbbbbbbbbbbbebebbbbbbbebbee:    
Contact         :b                                                                                                   

queryA      5626:ARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGD:5725
                :***********************************   **************************************************************:
5rma_B_1     302:ARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPAXXXVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGD: 401
SecStr          :  EEEEESSHHHHHHHHHHHHHHS GGGEEE    ---     SSEET TTSSEEEEEGGG  SEEEEEEEE  GGG  HHHHHHHHHHEEEEEEEEEE :    
ExpBur          :bbbbbbbeeeebbbebbeebeebbeeeebbbbeee---eebbeebeeeeeebebbbbbbebbbebebebbbbbebbebebbbbbbbbeebebebbbbbbb:    

queryA      5726:PAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLT:5825
                :****************************************************************************************************:
5rma_B_1     402:PAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLT: 501
SecStr          :TTS     TT  BS   GGGS HHHHHHHHT  SEE  EESSS HHHHHHHHHHHSTT  EESS   S EEEEE     EE SS EE HHHHHHHHHHHH:    
ExpBur          :bbbbbbebebbeeeebebebbbbbbebbeeeeeebebeebebbbbbbbebbbebbbeeebeeeeeeeeebbbbeeeeeeeeeeebbbbeebbbbbeebbe:    
Contact         :                                                                                 b      b           

queryA      5826:RNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIP:5917
                :********************************************************************************************:
5rma_B_1     502:RNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIP: 593
SecStr          :H GGGGG EEEES HHHHHHHHHHH   EEEHHHHTT  EEEEEEE    STTTT HHHHHHHHTTEEEEEEEEES HHHHHH  SEE    :    
ExpBur          :eeeebeebbbbbbbbbbbebbeeebebeeebbeebbeeebebbbbbbbbeeeebbeebbbbbbbbbbeebbbbbbbbeebbeebebeeeeee:    
Contact         :               b  bb  bb                                                                            


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