Protein Model on 5nfy_C_1_H_1
(TEMPLATE: 
5nfy
)Protein Model on 5nfy_C_1_H_1
(TEMPLATE: 5nfy
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(queryA) | C 1 (C) | polymer(polypeptide(L)) [514 aa] | Polyprotein 1ab :Q1T6X8_CVHSA | |
| 2 | b | H 1 (P) | polymer(polypeptide(L)) [133 aa] | Polyprotein 1ab :Q1T6X8_CVHSA | 5928N 5929V 5930T 5932L 5933F 5934K 5935D 5944H 5945P 5946T 5947Q 5948A 5949P 5950T 5951H 5952L 5954V 5963L 5964C 5965V 5966D 5972K 5976Y 5980I 5985F 5986K 5987M 5988N 5989Y 5990Q 5991V 5992N 5994Y 6020H 6027G 6029N 6049Y 6051D 6052T 6053P(E) 6054N 6055N 6056T 6117L 6120M 6121K 6124V 6125K 6126I 6142F 6149Y 6162Y (identity: 98.1 %/92.8 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5nfy_C_1 identity=92.8% |
queryA 5926:AENVTGLFKDCSKVITGLHPTQAPTHLSVDTKFKTEGLCVDIPGIPKDMTYRRLISMMGFKMNYQVNGYPNMFITREEAIRHVRAWIGFDVEGCHATREA:6025
:************* **************** ******************************************************************* *:
5nfy_C_1 8:AENVTGLFKDCSKIITGLHPTQAPTHLSVDIKFKTEGLCVDIPGIPKDMTYRRLISMMGFKMNYQVNGYPNMFITREEAIRHVRAWIGFDVEGCHATRDA: 107
SecStr : TT B B S TTT SSSTTS GGGEETTEE TTS S EEEE TT SB HHHHHHTGGGEEEEEEEEEEE SSB:
ExpBur :eeeeeeeeeebbeeeebbbeebbeeeeebbeebeeeeeeeeeeeeeeeeebebbbbbeeeeeeeeeeeeeebebeeeebeebbbbbbbbbbbbbebbeeb:
Contact : bbb bbbb bbbbbbbbb b bbbb b b b bbbbbbbb b b
queryA 6026:VGTNLPLQLGFSTGVNLVAVPTGYVDTPNNTDFSRVSAKPPPGDQFKHLIPLMYKGLPWNVVRIKIVQMLSDTLKNLSDRVVFVLWAHGFELTSMKYFVK:6125
:*************************** *** * ** ************************************** ************************:
5nfy_C_1 108:VGTNLPLQLGFSTGVNLVAVPTGYVDTENNTEFTRVNAKPPPGDQFKHLIPLMYKGLPWNVVRIKIVQMLSDTLKGLSDRVVFVLWAHGFELTSMKYFVK: 207
SecStr : S EEEEEEEESSS EEE EEEEEESSSEEEEE EE SSSTTGGGSGGGTS HHHHHHHHHHHHHHHHTTT SS EEEESSHHHHHHHHTTTB :
ExpBur :eebebbbbbbbebeeebbbbbbbbbbbeeeeeeeebebebbeeeeeeebeebbeeeeebeebbeebbebbbeebeebbebbbbbbbeeebbbbbbebbbe:
Contact : b b b bbbbbb b bb bb
queryA 6126:IGPERTCCLCDRRATCFSTASDTYACWHHSIGFDYVYNPFMIDVQQWGFTGNLQSNHDLYCQVHGNAHVASCDAIMTRCLAVHECFVKRVDWTIEYPIIG:6225
:*********** ******* ******* ** *************************** ******************************** ******:
5nfy_C_1 208:IGPERTCCLCDKRATCFSTSSDTYACWNHSVGFDYVYNPFMIDVQQWGFTGNLQSNHDQHCQVHGNAHVASCDAIMTRCLAVHECFVKRVDWSVEYPIIG: 307
SecStr : S B SSSSSB EEETTTTEEE TTT TT EE S EEEESGGGT SS HHHHHHTT SSS SSHHHHHHHHHHHHHHTTTTS TT S:
ExpBur :ebeeeebeebeebbbbbbeeeeebbbbeebeebbbbbbbbbbbbeeeeeeeebeebbeeebeeeeeeeebbbebebbbbbbbbbbbeeebeeebebeeee:
Contact :b b b b
queryA 6226:DELKINAACRKVQHMVVKAALLADKFPVLHDIGNPKAIKCVPQADVEWKFYDAQPCSDKAYKIEELFYSYATHSDKFTDGVCLFWNCNVDRYPANSIVCR:6325
:*** * *********** ************************* ************************** * ********************* ****:
5nfy_C_1 308:DELRVNSACRKVQHMVVKSALLADKFPVLHDIGNPKAIKCVPQAEVEWKFYDAQPCSDKAYKIEELFYSYAIHHDKFTDGVCLFWNCNVDRYPANAIVCR: 407
SecStr :SHHHHHHHHHHHHHHHHHHHHHHT SEEEEES SS SSSS SSEEEEEESS STTGGGEEE HHHHTTT SSEEEEES SS SSEEEEE:
ExpBur :ebeebeebbeebbebbbebbbebeebebbbbbebbebeebbeeeebebebbbeeeeeeeeeebeebebeeeebeeebeebbbbbbebebeebbebbbbbb:
queryA 6326:FDTRVLSNLNLPGCDGGSLYVNKHAFHTPAFDKSAFVNLKQLPFFYYSDSPCESHGKQVVSDIDYVPLKSATCITRCNLGGAVCRHHANEYRLYLDAYNM:6425
:************************************ **************** **************************** *******:
5nfy_C_1 408:FDTRVLSNLNLPGCDGGSLYVNKHAFHTPAFDKSAFTNLKQLPFFYYSDSPCEXXXXXXXXXXXYVPLKSATCITRCNLGGAVCRHHANEYRQYLDAYNM: 507
SecStr :E TT STTEEE SSS EEEESSSEEEE GGGGTTEEE EEE ----------- TTEEETT SSS SHHHHHHHHHHHHHHH:
ExpBur :bbbeeeeebbbebbeebbbbbbebbebbeeeeeebbeebeebeebbbbeeeee-----------eeeeeeeebbbeeeeeebebeebeeebeebeebbee:
queryA 6426:MISAGFSLWVYKQFDTYNLWNTFTR:6450
:********* ***************:
5nfy_C_1 508:MISAGFSLWIYKQFDTYNLWNTFTR: 532
SecStr :HHHTTEEEEEETT SHHHHTTS :
ExpBur :beeebbbbbbbeebeeeebeebbee:
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[assembly_id:3]
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