#WARNING:no index is registered index 'b'YP_009725309.1'' in 'http://www.uniprot.org/uniprot/' Protein Model on 5nfy_D_1_U_1

Protein Model on 5nfy_D_1_U_1 (TEMPLATE: 5nfy )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:4]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(queryA) D 1 (D) polymer(polypeptide(L)) [514 aa] Polyprotein 1ab :Q1T6X8_CVHSA
2 b U 1 (D) non-polymer(ZN) ZINC ION 207C 208C 209L 210C 226C 229H (identity: 100.0 %/92.8 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5nfy_D_1 identity=92.8%
queryA         1:AENVTGLFKDCSKVITGLHPTQAPTHLSVDTKFKTEGLCVDIPGIPKDMTYRRLISMMGFKMNYQVNGYPNMFITREEAIRHVRAWIGFDVEGCHATREA: 100
                :************* **************** ******************************************************************* *:
5nfy_D_1       8:AENVTGLFKDCSKIITGLHPTQAPTHLSVDIKFKTEGLCVDIPGIPKDMTYRRLISMMGFKMNYQVNGYPNMFITREEAIRHVRAWIGFDVEGCHATRDA: 107
SecStr          :     STT B B   S B TTT SSGGGB GGGEETTEE   TTS   S   EEE           TT   SB  HHHHHHTGGGEEEEEEEEEEE SSB:    
ExpBur          :eeeeeeeeeebbeeeeebbeebbeeeebbbeebeeeeeeeeeeeeeeeeebebbbbbeebeeeeeeeeebebebeeeebeeebbbbbbbbbbbbebeeeb:    

queryA       101:VGTNLPLQLGFSTGVNLVAVPTGYVDTPNNTDFSRVSAKPPPGDQFKHLIPLMYKGLPWNVVRIKIVQMLSDTLKNLSDRVVFVLWAHGFELTSMKYFVK: 200
                :*************************** *** * ** ************************************** ************************:
5nfy_D_1     108:VGTNLPLQLGFSTGVNLVAVPTGYVDTENNTEFTRVNAKPPPGDQFKHLIPLMYKGLPWNVVRIKIVQMLSDTLKGLSDRVVFVLWAHGFELTSMKYFVK: 207
SecStr          : S EEEEEEEESSS EEE   EEEEE SSSEEEEE  EE  SSGGGGGGTTHHHH   HHHHHHHHHHHHHHHHTTT SS EEEESSTHHHHHHHTTTB :    
ExpBur          :eebebbbbbbbeeeeebbbbbbbbbbbeeeeeeeebeeeebeeeeeeebeebeeebeebeebbeebbebbbeebeebeebbbbbbbeeebbbbbbebbbe:    

queryA       201:IGPERTCCLCDRRATCFSTASDTYACWHHSIGFDYVYNPFMIDVQQWGFTGNLQSNHDLYCQVHGNAHVASCDAIMTRCLAVHECFVKRVDWTIEYPIIG: 300
                :*********** ******* ******* ** ***************************  ********************************  ******:
5nfy_D_1     208:IGPERTCCLCDKRATCFSTSSDTYACWNHSVGFDYVYNPFMIDVQQWGFTGNLQSNHDQHCQVHGNAHVASCDAIMTRCLAVHECFVKRVDWSVEYPIIG: 307
SecStr          :  S  B TTSSSB  EEETTTTEEE TTT  S  EE S EEEEGGGGT SS HHHHHHTT SSS   S HHHHHHHHHHHHHHHHHTSS  TT      S:    
ExpBur          :ebeeeebeeeeebbbbbbeeeeebbbbeebeebbbbbbbbbbbbeebeeeeebeebbeeebeeeeeeeebbbbbebbbbbbbbbbbeeeeeeebebeeee:    
Contact         :      bbbb               b  b                                                                       

queryA       301:DELKINAACRKVQHMVVKAALLADKFPVLHDIGNPKAIKCVPQADVEWKFYDAQPCSDKAYKIEELFYSYATHSDKFTDGVCLFWNCNVDRYPANSIVCR: 400
                :***  * *********** ************************* ************************** * ********************* ****:
5nfy_D_1     308:DELRVNSACRKVQHMVVKSALLADKFPVLHDIGNPKAIKCVPQAEVEWKFYDAQPCSDKAYKIEELFYSYAIHHDKFTDGVCLFWNCNVDRYPANAIVCR: 407
SecStr          :S HHHHHHHHHHHHHHHHHHHHHH  SEEEEES SS   SSTT SSEEEEEESS  STT TTEEE    HHHHTTTT SSEEEEES   S   SSEEEEE:    
ExpBur          :ebeebeebbeebeebbbebbbebeebebbbbbebeebeebbeeeebebebbbeeeeeeeeeebeebebbeeebeeebeebbbbbbebebeebbebbbbbb:    

queryA       401:FDTRVLSNLNLPGCDGGSLYVNKHAFHTPAFDKSAFVNLKQLPFFYYSDSPCESHGKQVVSDIDYVPLKSATCITRCNLGGAVCRHHANEYRLYLDAYNM: 500
                :************************************ ****************           **************************** *******:
5nfy_D_1     408:FDTRVLSNLNLPGCDGGSLYVNKHAFHTPAFDKSAFTNLKQLPFFYYSDSPCEXXXXXXXXXXXYVPLKSATCITRCNLGGAVCRHHANEYRQYLDAYNM: 507
SecStr          :E TT   SSEEE SSS EEE SSS EEE    GGGGTTEEE    EEE S   -----------      TTEEESS SSS   HHHHHHHHHHHHHHHH:    
ExpBur          :bbbeeeeebbbebbeebbbbbbebbebbeebeeebbeebeebebbbbbeeeee-----------eeeeeeeebbbeeeeeeeebeebbeebeebeebbeb:    


Input Residue Numbers for Focused Sites

ex) 2,15,123