Protein Model on 5nfy_B_1_F_1
(TEMPLATE: 
5nfy
)Protein Model on 5nfy_B_1_F_1
(TEMPLATE: 5nfy
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(queryA) | B 1 (B) | polymer(polypeptide(L)) [514 aa] | Polyprotein 1ab :Q1T6X8_CVHSA | |
| 2 | b | F 1 (N) | polymer(polypeptide(L)) [133 aa] | Polyprotein 1ab :Q1T6X8_CVHSA | 2E 3N 4V 5T 6G 8F 9K 10D 19H 20P 21T 22Q 23A 24P 25T 26H 27L 29V 35T 38L 39C 40V 41D 47K 51Y 55I 60F 61K 62M 63N 64Y 65Q 66V 67N 69Y 95H 101V 102G 124Y 126D 127T 128P(E) 129N 130N 131T 192L 195M 196K 199V 200K 201I 217F 224Y 237Y (identity: 98.1 %/92.8 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5nfy_B_1 identity=92.8% |
queryA 1:AENVTGLFKDCSKVITGLHPTQAPTHLSVDTKFKTEGLCVDIPGIPKDMTYRRLISMMGFKMNYQVNGYPNMFITREEAIRHVRAWIGFDVEGCHATREA: 100
:************* **************** ******************************************************************* *:
5nfy_B_1 8:AENVTGLFKDCSKIITGLHPTQAPTHLSVDIKFKTEGLCVDIPGIPKDMTYRRLISMMGFKMNYQVNGYPNMFITREEAIRHVRAWIGFDVEGCHATRDA: 107
SecStr : TT B B S TTT SSTTTS GGGEETTEE TTS S EEEE TTS SB HHHHHHT SSEEEEEEEEEEE SSB:
ExpBur :eeeeeeeeeebbeeeebbbeebbeeeeebbeebeeeeeeeeeeeeeeeeebebbbbbeebeeeeeeeeebebebeeeebeebbbbbbbbbbbbbebbeeb:
Contact : bbbbb bbb bbbbbbbbb b b bbbb b b b bbbbbbbb b b
queryA 101:VGTNLPLQLGFSTGVNLVAVPTGYVDTPNNTDFSRVSAKPPPGDQFKHLIPLMYKGLPWNVVRIKIVQMLSDTLKNLSDRVVFVLWAHGFELTSMKYFVK: 200
:*************************** *** * ** ************************************** ************************:
5nfy_B_1 108:VGTNLPLQLGFSTGVNLVAVPTGYVDTENNTEFTRVNAKPPPGDQFKHLIPLMYKGLPWNVVRIKIVQMLSDTLKGLSDRVVFVLWAHGFELTSMKYFVK: 207
SecStr : S EEEEEEEESSS EEE EEEEEESSSEEEEE EE SSGGGGGGSGGGTS HHHHHHHHHHHHHHHHTTT SS EEEESSHHHHHHHHTTTEE:
ExpBur :eebebbbbbbbbeeeebbbbbbbbbbbeeeeeeeebeeeebeeeeeeebeebbeeeeebeebbeebbebbbeebeebbebbbbbbbeeebbbbbbebbbe:
Contact :bb b bbbbbb b bb bb
queryA 201:IGPERTCCLCDRRATCFSTASDTYACWHHSIGFDYVYNPFMIDVQQWGFTGNLQSNHDLYCQVHGNAHVASCDAIMTRCLAVHECFVKRVDWTIEYPIIG: 300
:*********** ******* ******* ** *************************** ******************************** ******:
5nfy_B_1 208:IGPERTCCLCDKRATCFSTSSDTYACWNHSVGFDYVYNPFMIDVQQWGFTGNLQSNHDQHCQVHGNAHVASCDAIMTRCLAVHECFVKRVDWSVEYPIIG: 307
SecStr : S B SSSSSB EEETTTTEEE SSS TT EEES EEEEGGGGT S HHHHHHTS SSS SSHHHHHHHHHHHHHHTTSSSS TT S:
ExpBur :ebeeeebeeeeebbbbbbeeeeebbbbeebeebbbbbbbbbbbbeebebeeebeebbeeebeeeeeeeebbbebebbbbbbbbebbeeeeeeebebeeee:
Contact :b b b b
queryA 301:DELKINAACRKVQHMVVKAALLADKFPVLHDIGNPKAIKCVPQADVEWKFYDAQPCSDKAYKIEELFYSYATHSDKFTDGVCLFWNCNVDRYPANSIVCR: 400
:*** * *********** ************************* ************************** * ********************* ****:
5nfy_B_1 308:DELRVNSACRKVQHMVVKSALLADKFPVLHDIGNPKAIKCVPQAEVEWKFYDAQPCSDKAYKIEELFYSYAIHHDKFTDGVCLFWNCNVDRYPANAIVCR: 407
SecStr :S HHHHHHHHHHHHHHHHHHHHHH SEEEEES SS SSSS SEEEEEESS STTSTTEEE HHHHTTS SSEEEEES S SSEEEEE:
ExpBur :ebeebeebbeebbebbbebbbebeebebbbbbebeebeebbeebebebebbbeeeeeeeeeebeeeebbbeebeeebeebbbbbbebebeebbebbbbbb:
queryA 401:FDTRVLSNLNLPGCDGGSLYVNKHAFHTPAFDKSAFVNLKQLPFFYYSDSPCESHGKQVVSDIDYVPLKSATCITRCNLGGAVCRHHANEYRLYLDAYNM: 500
:************************************ **************** **************************** *******:
5nfy_B_1 408:FDTRVLSNLNLPGCDGGSLYVNKHAFHTPAFDKSAFTNLKQLPFFYYSDSPCEXXXXXXXXXXXYVPLKSATCITRCNLGGAVCRHHANEYRQYLDAYNM: 507
SecStr :E TT STTEEE SSS EEE SSS EEE GGGGTTEEE EEE S ----------- TTEEETTTTTT HHHHHHHHHHHHHHHH:
ExpBur :bbbeeeeebbbebbeebbbbbbebbeebeebeeebbebbeebebbbbbeeeee-----------eeeeeeeebbbebbeeeeebeebeeebeebeebbeb:
queryA 501:MISAGFSLWVYKQFDTYNLWNTFTR: 525
:********* ***************:
5nfy_B_1 508:MISAGFSLWIYKQFDTYNLWNTFTR: 532
SecStr :HHHTTEEEEEETT THHHHGGG :
ExpBur :beebbbbbbbbeebeeeebeeebee:
|
[assembly_id:2]
[help]