[pdbjlvh2]Protein Model on 4uj3_V_1_PA

Protein Model on 4uj3_V_1_PA_1 (TEMPLATE: 4uj3 )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:8]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(RAB7A_HUMAN)	V 1 (V)	polymer(polypeptide(L)) [169 aa]	RAS-RELATED PROTEIN RAB-11A :RB11A_HUMAN
2	b		PA 1 (V)	non-polymer(PG4)	TETRAETHYLENE GLYCOL	126K (identity: 100.0 %/41.4 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:4uj3_V_1 identity=41.4%

queryA         8:LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL: 107
                :* **   *******  *        *    * ***  * *    **      ******* *       * ****    ** *     *      *  *  :
4uj3_V_1      12:LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLEXXXAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR: 111
SecStr          :EEEEEEEESTTSSHHHHHHHHHH    TT     SEEEEEEEEEETTEEEEEEEEEE S  ---   HHHHTT  EEEEEEETT HHHHHTHHHHHHHHH:    
ExpBur          :ebbbbbbbbeebbbebbbbbbeeeeeeeeeeebeeeeebeeebebeeeebebebbbeebee---eeeeebbeebebbbbbbbbeeeebbeebeebbebbe:    

queryA       108:IQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI: 169
                :  *      *      *** **   * * *  * *    **     ****    *** *****:
4uj3_V_1     112:DHADS----NIVIMLVGNKSDLRHLRAVPTDEARAFA-EKNGLSFIETSALDSTNVEAAFQTI: 169
SecStr          :HHS T----T EEEEEEE TT  TT  S HHHHHHHH-HHTT EEEE  TTT TTHHHHHHHH:    
ExpBur          :eebee----ebbbbbbbbebeeeeeeebeeeebeeeb-eeeebbbbbbbbeeeeebeebbeeb:    
Contact         :                  b

Protein Model on 4uj3_V_1_PA_1 (TEMPLATE: 4uj3 )

Input Residue Numbers for Focused Sites