Protein Model on 4phh_A_1_E_1 (TEMPLATE: 4phh )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(RAB7A_HUMAN) A 1 (A) polymer(polypeptide(L)) [172 aa] GTP-binding protein YPT7 :YPT7_YEAST
2 b E 1 (A) non-polymer(2UK) 5'-O-[(R)-hydroxy{[(S)-hydroxy(phosphonoamino)phosphoryl]oxy}phosphoryl]-N-[3-(propanoylamino)propyl]guanosine 16D 17S 18G 19V 20G 21K 22T 23S 33F(Y) 34S 35N(C) 37Y 40T 66G 125N 126K 128D 155S 156A 157K (identity: 90.0 %/68.6 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:4phh_A_1 identity=68.6%
queryA         8:LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVD-DRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEF: 106
                : *****************  *** * * *************** ** *   *** ***********  ************* ***    *    ******:
4phh_A_1      10:ILKVIILGDSGVGKTSLMHRYVNDKYSCQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSXXVAFYRGADCCVLVYDVTNASSFENIKSWRDEF: 109
SecStr          : EEEEEE  TTSSHHHHHHHHHHS   SS     S EEEEEEEE TTS EEEEEEEE  SSGGG  -- GGGTT SEEEEEEETT HHHHHTHHHHHHHH:    
ExpBur          :ebbbbbbbbeebbbeebbebbbeeeeeeeeeeeeeeeeeeeebebeeeeebebebbbbbbeeeeee--eebbbebbbbbbbbbbeeeebbeebeebeeeb:    
Contact         :        bbbbbbbb         bbb b  b                          b                                        

queryA       107:LIQASPRDPENFPFVVLGNKIDLENRQ--VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ: 176
                :*  *    ** **** ****** *     *  * **    *   ** * **** ****  **  *** ** *:
4phh_A_1     110:LVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ: 181
SecStr          :HHHH  S TTTS EEEEEE TTS GGG  S HHHHHHHHHHTTS  EEEEBTTTTBSHHHHHHHHHHHHHHH:    
ExpBur          :eeebeeeeeeebbbbbbbbebebeeeeeebeeeebeeebeebeebebbebbbeeeeebeebbeebbebbeee:    
Contact         :                  bb b                            bbb                                               


Input Residue Numbers for Focused Sites

ex) 2,15,123