Protein Model on 4kyi_F_1_E_1
(TEMPLATE: 
4kyi
)Protein Model on 4kyi_F_1_E_1
(TEMPLATE: 4kyi
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DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(RAB7A_HUMAN) | F 1 (F) | polymer(polypeptide(L)) [164 aa] | Ras-related protein Rab-5C :RAB5C_HUMAN | |
| 2 | b | E 1 (E) | polymer(polypeptide(L)) [531 aa] | VipD :Q5ZRP9_LEGPH | 41I 42G 43A 44D(A) 45F 58T(K) 60Q(E) 62W 69R 70F(Y) 73L 76A(M) 79R (identity: 61.5 %/44.3 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:4kyi_F_1 identity=44.3% |
queryA 9:LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLI: 108
: * ** * *** ** * * **** *** * ** * ****** ** ** **** * * * ** * * :
4kyi_F_1 10:FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQR: 109
SecStr :EEEEEEE TTS SHHHHHHHHTS TT SEEEEEEEEE SS EEEEEEEEE SSGGGTTTHHHHSS SEEEEEEETT HHHHHHHHHHHHHHHH:
ExpBur :bbbbbbbeeebbbbbbbbebbeeeeeeeeeebebeeeeeeebebeeeebebebebbbbeeeeeeebeebbeebebbbbbbbbeeeebbeebeebbebbee:
Contact : bbbbb b b b bb b b b
queryA 109:QASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR: 171
:**** * *** ** * * *** * ***** * ** * ** :
4kyi_F_1 110:QASP----NIVIALAGNKADLASKRAVEFQEAQAYA-DDNSLLFMETSAKTAMNVNEIFMAIAK: 168
SecStr :HS T----T EEEEEEE TT GGG S HHHHHHHH-HHTT EEE BTTTTBTHHHHHHHHHH:
ExpBur :ebee----ebbbbbbbbebeeeeeeebeeeebeebb-eeeebbbebbbbeeeeebeebbbbbbe:
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[assembly_id:3]
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