[pdbjlvh2]Protein Model on 2ocb_A_1_E

Protein Model on 2ocb_A_1_E_1 (TEMPLATE: 2ocb )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(RAB7A_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [173 aa]	Ras-related protein Rab-9B :RAB9B_HUMAN
2	b		E 1 (A)	non-polymer(UNX)	UNKNOWN ATOM OR ION	127I(V) 128D 158E(D) 160I(T) (identity: 25.0 %/57.1 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:2ocb_A_1 identity=57.1%

queryA         5:KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRD: 104
                :*  ***** *** **** **** **  **  *   ***  **     ** * ** *********** **   ******** * * *     *  *  *  :
2ocb_A_1       4:KSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQK: 103
SecStr          :  EEEEEEEE  TTSSHHHHHHHHHHS   TT     SEEEEEEEEESSS EEEEEEEEE  SGGGHHHHGGG TT SEEEEEEETT HHHHHTHHHHHH:    
ExpBur          :eeeebbbbbbbbeebbbebbbebbeeeeeeeeeeeeebeeeeeeebebeeeebbbbbbbbbbeeeeeeebbeebeebebbbbbbbbeeeebbeebeebbe:    

queryA       105:EFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL: 174
                :**   *   *** ********* * * *** *  ** **      ** *****   **  **    *  *:
2ocb_A_1     104:EFIYYADVKDPEHFPFVVLGNKVDKEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVL: 173
SecStr          :HHHHHTT S TTTS EEEEEE TTSS  SS HHHHHHHHHHTT   EEE BTTTTBSHHHHHHHHHHHHH:    
ExpBur          :bbeeebebeeeeebbbbbbbbeeeeeeeebeeeebeebbeeeeebebbbbbbeeeeebeebbeebbeebe:    
Contact         :                      bb                             b b

Protein Model on 2ocb_A_1_E_1 (TEMPLATE: 2ocb )

Input Residue Numbers for Focused Sites