[pdbjlvh2]Protein Model on 1vg9_D_1_C

Protein Model on 1vg9_D_1_C_1 (TEMPLATE: 1vg9 )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(RAB7A_HUMAN)	D 1 (D)	polymer(polypeptide(L)) [173 aa]	Ras-related protein Rab-7 :RAB7_RAT
2	b		C 1 (C)	polymer(polypeptide(L)) [502 aa]	Rab proteins geranylgeranyltransferase component A 1 :RAE1_RAT	17S 42G 44D 45F 62W 63D 65A 67Q 69R 70F 71Q 72S 74G 75V 76A 79R 108I 111S (identity: 100.0 %/98.3 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:1vg9_D_1 identity=98.3%

queryA         6:KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDE: 105
                :********************************   *****************************************************************:
1vg9_D_1       6:KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYXXXIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDE: 105
SecStr          :  EEEEEEE  TTSSHHHHHHHHHH       ---    EEEEEEEETTEEEEEEEE  TTGGGGT   HHHHTT SEEEEEEETTBHHHHHTHHHHHHH:    
ExpBur          :ebebbbbbbbbeebbbeebbebbbeeeeeeee---eeeeeeeeebebeeeebebbbebbeeebeeeebeeebbeebbbbbbbbbbeeeebbeebeebbee:    
Contact         :           b                        b bb                bb b b bbbb bbb  b                          

queryA       106:FLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVE: 181
                :****************************************************************************:
1vg9_D_1     106:FLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVE: 181
SecStr          :HHHHH  SSGGG  EEEEEE TTSS   S HHHHHHHHHHTT   EEE BTTTTBSHHHHHHHHHHHHHHHHHHH :    
ExpBur          :bbeebebeeeeebbbbbbbbeeeeeeeebeeeebeebbeeeeebebbbbbbeeeeebeebbebbbeebbebbeeee:    
Contact         :  b  b

Protein Model on 1vg9_D_1_C_1 (TEMPLATE: 1vg9 )

Input Residue Numbers for Focused Sites