Protein Model on 1ukv_B_1_A_1
(TEMPLATE: 
1ukv
)Protein Model on 1ukv_B_1_A_1
(TEMPLATE: 1ukv
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DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(RAB7A_HUMAN) | B 1 (Y) | polymer(polypeptide(L)) [197 aa] | GTP-binding protein YPT1 :YPT1_YEAST | |
| 2 | b | A 1 (G) | polymer(polypeptide(L)) [442 aa] | Secretory pathway GDP dissociation inhibitor :GDI1_YEAST | 40T 41I 42G 44D 45F 62W 63D 65A 67Q 69R 70F 72S(T) 74G(T) 75V(S) 76A(S) 77F(Y) 79R 107L(D) 108I(R) 109Q(Y) 110A (identity: 61.9 %/38.8 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:1ukv_B_1 identity=38.8% |
queryA 8:LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL: 107
:* * * ***** * * * *** ** * * * * *********** *** * *** * * * :
1ukv_B_1 8:LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEID: 107
SecStr :EEEEEEEESTTSSHHHHHHHHHHS TT SS EEEEEEEETTEEEEEEEE TTTTTTT HHHHTT SEEEEEEETT HHHHHHHHHHHHHHH:
ExpBur :ebebbbbbbeebbbebbbbbbeeeeeeeeeeeeeebeeeeeebebeeebbebebebbeeebeeeebeeebbeebebbbbbbbbeeeebbebbebbbebbe:
Contact : bbb bb bb b b bb b bbbb b b
queryA 108:IQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR: 171
: * *** ** * * * **** *** ** * **:
1ukv_B_1 108:RYATS----TVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMAR: 167
SecStr :HHS T----T EEEEEEE TT TTT S HHHHHHHHHHTT EEE TTT TTHHHHHHHHHH:
ExpBur :eebee----ebbbbbbbbebeeeeeeebeeeebeeebeeeebebebbbbeeeeebeebbbebbe:
Contact :bbb
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[assembly_id:1]
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