[pdbjlvh2]Protein Model on 8qkb_D_1_IA

Protein Model on 8qkb_D_1_IA_1 (TEMPLATE: 8qkb )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(CATL1_HUMAN)	D 1 (D)	polymer(polypeptide(L)) [220 aa]	Cathepsin L :CATL1_HUMAN
2	b		IA 1 (D)	non-polymer(EDO)	1,2-ETHANEDIOL	184D 185Y 225F 227D (identity: 100.0 %/99.5 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8qkb_D_1 identity=99.5%

queryA       114:APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKY: 213
                :****************************************************************************************************:
8qkb_D_1       1:APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKY: 100
SecStr          :  S EEGGGGT      B  SSS HHHHHHHHHHHHHHHHHHS    B HHHHHHH GGGT  GGG   HHHHHHHHHHHT EEBTTTS   SS      :    
ExpBur          :eeeebbbeeeebbbeebebeebebbbbbbbbbbbbbbbbeeeeeeeebbbbbbbbbbeebebebeeeeebbebbebbeeeebbbbbeebebeeeeeeeeb:    
Contact         :                                                                      bb                            

queryA       214:NPKYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVK: 313
                :********* ******************************************************************************************:
8qkb_D_1     101:NPKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVK: 200
SecStr          : GGGEEE  S EEE  SSHHHHHHHHHHT SEEEEE   SHHHHT  SSEE  TT  SS   EEEEEEEEEE S GGG  EEEEEE SB TTSTBTTEEE:    
ExpBur          :eeeeeebebebeeebeeebebbbebbbebbbbbbbbbbebeebeebeeeebebeebeeeeeebbbbbbbbbeeeeeeeeeebbbbbbbebeebeeebbbb:    
Contact         :           b b                                                                                      

queryA       314:MAKDRRNHCGIASAASYPTV: 333
                :********************:
8qkb_D_1     201:MAKDRRNHCGIASAASYPTV: 220
SecStr          :EE SSSSGGGTTTT EEE  :    
ExpBur          :bbbeeebbbbbbbebbbbee:

Protein Model on 8qkb_D_1_IA_1 (TEMPLATE: 8qkb )

Input Residue Numbers for Focused Sites