[pdbjlvh2]Protein Model on 8b4f_C_1_V

Protein Model on 8b4f_C_1_V_1 (TEMPLATE: 8b4f )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:3] [assembly_id:5]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(CATL1_HUMAN)	C 1 (C)	polymer(polypeptide(L)) [216 aa]	Cathepsin L :CATL1_HUMAN
2	b		V 1 (C)	non-polymer(NA)	SODIUM ION	254E (identity: 100.0 %/97.7 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8b4f_C_1 identity=97.7%

queryA       114:APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKY: 213
                :****************************************************************************************************:
8b4f_C_1       1:APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKY: 100
SecStr          :  S EEHHHHT      B TTSB HHHHHHHHHHHHHHHHHHS    B HHHHHHH TTTT  TTB   HHHHHHHHHHHT EEBTTTS   SS      :    
ExpBur          :eeeebbbeeeebbbebbebeebebbbbbbbbbbbbbbbeeeeeeeeebbbbbbbbbbeeeebebbeeeebbebbebbeeeebbbbbeebeeeeeeeeeeb:    

queryA       214:NPKYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVK: 313
                :********* ****************************************************************    **********************:
8b4f_C_1     101:NPKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESXXXXNNKYWLVKNSWGEEWGMGGYVK: 200
SecStr          : GGGEEE  S EEE  S HHHHHHHHHHH  EEEEE   SHHHHT  SSEE  TT  SS   EEEEEEEEE   ----  EEEEEE SB SSSTBTTEEE:    
ExpBur          :eeeeeebebebeeebeeebebbbebbbebbbbbbbbbbebeebeebeeeebebeebeeeeeebbbbbbbbbeee----eeebbbbbbbebeebbeebbbe:    
Contact         :                                        b                                                           

queryA       314:MAKDRRNHCGIASAASYPTV: 333
                :********************:
8b4f_C_1     201:MAKDRRNHCGIASAASYPTV: 220
SecStr          :EEESSSSGGGTTSS EEE  :    
ExpBur          :bbbeeebbbbbbbebbbbee:

Protein Model on 8b4f_C_1_V_1 (TEMPLATE: 8b4f )

Input Residue Numbers for Focused Sites