[pdbjlvh2]Protein Model on 7q8i_B_1_D

Protein Model on 7q8i_B_1_D_1 (TEMPLATE: 7q8i )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(CATL1_HUMAN)	B 1 (BA)	polymer(polypeptide(L)) [221 aa]	Cathepsin L2 :CATL2_HUMAN
2	b		D 1 (PB)	polymer(polypeptide(L)) [6 aa]	AVAEKQ peptide	132Q 133G(K) 134Q 135C 138C(S) 257L(Q) 258F 275D 276H 302W (identity: 70.0 %/79.0 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:7q8i_B_1 identity=79.0%

queryA       115:PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYN: 214
                :* ***** ********** **** ****************** * *********** **** ***** *  *****  ************ *  * *** :
7q8i_B_1       3:PKSVDWRKKGYVTPVKNQKQCGSSWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYR: 102
SecStr          : S EEGGGGT      B TTSB HHHHHHHHHHHHHHHHHHS    B HHHHHHH GGGT  TTB   HHHHHHHHHHHT EEBTTTS   SS       :    
ExpBur          :eeebbbeeeebbbeebebeebebbbbbbbbbbbbbbbbeeeeeeebbbbbbbbbbbeeeebebbeeeebeebbebbeeeebbbbeeebebebeeeeeebe:    
Contact         :                 bbbb  b                                                                            

queryA       215:PKYSVANDTGFVDI-PKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVK: 313
                :*  *** ****    *  ***************** **** ** *** **********   ************   * * ********** ***  ****:
7q8i_B_1     103:PENSVAQDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSQNSKYWLVKNSWGPEWGSNGYVK: 202
SecStr          :GGGEEE  S EEE  TT HHHHHHHHHHT  EEEEE   SHHHHT  SSEE  TT  SSS  EEEEEEEEEESSS TTSSEEEEEE SB TTSTBTTEEE:    
ExpBur          :eeeeebebebeeebeeeebeebbebbbebbbbbbbbbbebeebeebeeeebebeebbeeeeebbbbbbbbbeeeeeeeeebbbbbbbbbbeebbeebbbe:    
Contact         :                                           bb                bb                         b           

queryA       314:MAKDRRNHCGIASAASYPTV: 333
                : ***  ****** ***** *:
7q8i_B_1     203:IAKDKNNHCGIATAASYPNV: 222
SecStr          :EESSSSSGGGTTTS EEE  :    
ExpBur          :bbbeeebbbbbbeebbbbee:

Protein Model on 7q8i_B_1_D_1 (TEMPLATE: 7q8i )

Input Residue Numbers for Focused Sites