[pdbjlvh2]Protein Model on 6yyp_A_1_B

Protein Model on 6yyp_A_1_B_1 (TEMPLATE: 6yyp )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(CATL1_HUMAN)	A 1 (AAA)	polymer(polypeptide(L)) [220 aa]	Cathepsin S :CATS_HUMAN
2	b		B 1 (BBB)	polymer(polypeptide(L)) [222 aa]	Cathepsin S :CATS_HUMAN	131N(Y) 133G 134Q(S) 253H 254E(P) 255S 257L(F) 258F(L) 260K(R) 266E 268D(S) 302W 305E(N) (identity: 38.5 %/57.0 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:6yyp_A_1 identity=57.0%

queryA       115:PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ-GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKY: 213
                :* ******** ** ** ** **  ***** **** *   *** * *** *******    ** ***** *  ****  ** * **  **** *    * *:
6yyp_A_1       4:PDSVDWREKGCVTEVKYQGSCGAUWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQY: 103
SecStr          : S EEGGGGT      B TTSB HHHHHHHHHHHHHHHHHHS    B HHHHHHHS GGGT  TTB   HHHHHHHHHHHT EEBTTTS   SS      :    
ExpBur          :eeebbbeeeebbbebbebeebebbbbbbbbbbbbbbbeeeeeeeeebbbbbbbbbbeeebebebbeeeebbebbebbeeeebbbbeeebebeeeeeeeeb:    
Contact         :                b bb                                                                                

queryA       214:NPKYSVANDTGFVDIP-KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYV: 312
                :  **  *        *   *  *  ***  ** **  ** * **  *  * * ** *      *********          *********   *  ** :
6yyp_A_1     104:DSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSC-TQNVNHGVLVVGYG----DLNGKEYWLVKNSWGHNFGEEGYI: 198
SecStr          : GGGEEE  SEEEE  TT HHHHHHHHHHT  EEEEE   SHHHHT  SSEE  TT - S   EEEEEEEEE----EETTEEEEEEE SB TTSTBTTEE:    
ExpBur          :eeeeeebebeeeeebeeeebebbeebbbeebbbbbbbbbebeebeebeeeebebeeb-eeeeebbbbbbbbb----eeeeeebbbbbbbebeebeeebbb:    
Contact         :                                        bbb bb b     b b                                 b  b       

queryA       313:KMAKDRRNHCGIASAASYPTV: 333
                : **    *******  ***  :
6yyp_A_1     199:RMARNKGNHCGIASFPSYPEI: 219
SecStr          :EEE SSSSGGGTTTS EEEE :    
ExpBur          :ebbbeeebbbbbbbebbbbeb:

Protein Model on 6yyp_A_1_B_1 (TEMPLATE: 6yyp )

Input Residue Numbers for Focused Sites