[pdbjlvh2]Protein Model on 6yyn_A_1_D

Protein Model on 6yyn_A_1_D_1 (TEMPLATE: 6yyn )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(CATL1_HUMAN)	A 1 (AAA)	polymer(polypeptide(L)) [220 aa]	Cathepsin S :CATS_HUMAN
2	b		D 1 (AAA)	non-polymer(FLC)	CITRATE ANION	159I(V) 198S 200E(A) (identity: 33.3 %/57.5 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:6yyn_A_1 identity=57.5%

queryA       115:PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ-GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKY: 213
                :* ******** ** ** ** ** ****** **** *   *** * *** *******    ** ***** *  ****  ** * **  **** *    * *:
6yyn_A_1       4:PDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQY: 103
SecStr          : S EEGGGGT      B TTSB HHHHHHHHHHHHHHHHHHS    B HHHHHHHS GGGT  TTB   HHHHHHHHHHHT EEBTTTS   SS      :    
ExpBur          :eeebbbeeeebbbebbebeebebbbbbbbbbbbbbbbeeeeeeeebbbbbbbbbbbeeeeebebbeeeebeebbebbeeeebbbbeeebebeeeeeeeeb:    
Contact         :                                            b                                       b b             

queryA       214:NPKYSVANDTGFVDIP-KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYV: 312
                :  **  *        *   *  *  ***  ** **  ** * **  *  * * ** *      *********          *********   *  ** :
6yyn_A_1     104:DSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSC-TQNVNHGVLVVGYG----DLNGKEYWLVKNSWGHNFGEEGYI: 198
SecStr          : GGGEEE   EEEE  TT HHHHHHHHHHT  EEEEE   SHHHHH  SSEE  TT - S   EEEEEEEEE----EETTEEEEEEE SB TTSTBTTEE:    
ExpBur          :eeeeeebebeeeeebeeeebebbeebbbeebbbbbbbbbebeebeebeebbbebeeb-eeeeebbbbbbbbb----eeeeeebbbbbbbbbeebbeebbb:    

queryA       313:KMAKDRRNHCGIASAASYPTV: 333
                : **    *******  ***  :
6yyn_A_1     199:RMARNKGNHCGIASFPSYPEI: 219
SecStr          :EEE SSSSGGGTTTS EEEE :    
ExpBur          :bbbbeeebbbbbbbebbbbeb:

Protein Model on 6yyn_A_1_D_1 (TEMPLATE: 6yyn )

Input Residue Numbers for Focused Sites