[pdbjlvh2]Protein Model on 6qlm_B_1_G

Protein Model on 6qlm_B_1_G_1 (TEMPLATE: 6qlm )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(CATL1_HUMAN)	B 1 (B)	polymer(polypeptide(L)) [216 aa]	Cathepsin K :CATK_HUMAN
2	b		G 1 (B)	non-polymer(MHA)	(CARBAMOYLMETHYL-CARBOXYMETHYL-AMINO)-ACETIC ACID	117S 118V 119D 122E(K) 123K (identity: 80.0 %/60.0 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:6qlm_B_1 identity=60.0%

queryA       113:EAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCK: 212
                : ** *** * ********************  ******   *** *  ** ******     * ** ** *  ****** * * ***  ***   **** :
6qlm_B_1       1:RAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE--NDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCM:  98
SecStr          :   S EEGGGGT      B  SSB HHHHHHHHHHHHHHHHHHS    B HHHHHHH TT--S TTB   HHHHHHHHHHHT EEBTTTS   SS  S  :    
ExpBur          :eeeeebbbeeeebbbebeebeebebbbbbbbbbbbbbbbeeeeeeeeebbbbbbbbbbee--bebbeeeebbbbbebbeeeebbbbbeebeeeeeeeeee:    
Contact         :    bbb  bb                                                                                         

queryA       213:YNPKYSVANDTGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGY: 311
                :***    *   *   **   ****  *** *** ******   ** **  * *    * *    * ** ****        ** *  ****** **  **:
6qlm_B_1      99:YNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQK----GNKHWIIKNSWGENWGNKGY: 194
SecStr          :  GGGEEE    EEE  TT HHHHHHHHHHT  EEEEE   SHHHHT  SSEE  TT  TT   EEEEEEEEEEET----TEEEEEEE SB TTSTBTTE:    
ExpBur          :beeebeebebebeeebeeeebeebeebbeebbbbbbbbbbeeeebeebeeeebeeeebeeeeeebbbbbbbbbeee----eeebbbbbbbebeebeeebb:    

queryA       312:VKMAKDRRNHCGIASAASYPTV: 333
                :  **    * ****  ** *  :
6qlm_B_1     195:ILMARNKNNACGIANLASFPKM: 216
SecStr          :EEEE SSSSGGGTTSS EEE  :    
ExpBur          :bbbbbeeebbbbbbbebbbbeb:

Protein Model on 6qlm_B_1_G_1 (TEMPLATE: 6qlm )

Input Residue Numbers for Focused Sites