[pdbjlvh2]Protein Model on 6jd8_A_1_O

Protein Model on 6jd8_A_1_O_1 (TEMPLATE: 6jd8 )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(CATL1_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [314 aa]	Cathepsin L1 :CATL1_HUMAN
2	b		O 1 (A)	non-polymer(PEG)	DI(HYDROXYETHYL)ETHER	221N 222D 223T 333V (identity: 100.0 %/97.5 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:6jd8_A_1 identity=97.5%

queryA        18:TLTFDHSLEAQWTKWKAMHNRLYGMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLFYEAPRS: 117
                :*******************************************************************************  *******************:
6jd8_A_1      45:TLTFDHSLEAQWTKWKAMHNRLYGMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQXXKPRKGKVFQEPLFYEAPRS: 144
SecStr          :  S  GGGHHHHHHHHHHTT    TTTHHHHHHHHHHHHHHHHHHHHHHHTT  SEEE   TTTT  HHHHHHH     --    SEE    SS    S :    
ExpBur          :eeebeeebeeebeebbeebeeebeeebeeebbbebbebbebbeebbeeeeeeeeebebebbbbbbbbeeebeebbeebe--eeeeeeebeebeeeebeee:    

queryA       118:VDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKY: 217
                :******************** ******************************************* ***********************************:
6jd8_A_1     145:VDWREKGYVTPVKNQGQCGSSWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGYMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKY: 244
SecStr          :EEGGGGT      B  SSB HHHHHHHHHHHHHHHHHHS    B HHHHHHH TTTT  TTB   HHHHHHHHHHHT EEBTTTS   SS       GGG:    
ExpBur          :bbbeeeebbbebbebeebbbbbbbbbbbbbbbbbbeeeeeeeebbbbbbbbbbeeeebebbebbbbbebbebbeeeebbbbeeebeeeeeeeeeebeeee:    

queryA       218:SVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKD: 317
                :******************************************************** ** ************ ***************************:
6jd8_A_1     245:SVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDLDHAVLVVGYGFESTEXDNNKYWLVKNSWGEEWGMGGYVKMAKD: 344
SecStr          :EEE  S EEE  S HHHHHHHHHHH  EEEEE   SHHHHTEEEEEE  TT  SS   EEEEEEEEEESS  -  SEEEEEE SB TTSTBTTEEEEE S:    
ExpBur          :eebebebbbbbeeebebbbbbbbebbbbbbbbbbebebbbbbeebbbbbeebbeeebbbbbbbbbbbeeeee-eeebbbbbbbbbbeebbeebbbbbbbe:    
Contact         :   bbb                                                                                              

queryA       318:RRNHCGIASAASYPTV: 333
                :********* ******:
6jd8_A_1     345:RRNHCGIASLASYPTV: 360
SecStr          :SSSGGGTTTT EEE  :    
ExpBur          :eeebbbbbbbbbbbbb:    
Contact         :               b

Protein Model on 6jd8_A_1_O_1 (TEMPLATE: 6jd8 )

Input Residue Numbers for Focused Sites