Protein Model on 2bdl_A_1_B_1 (TEMPLATE: 2bdl )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(CATL1_HUMAN) A 1 (A) polymer(polypeptide(L)) [215 aa] Cathepsin K :CATK_HUMAN
2 b B 1 (A) non-polymer(4PR) (3S)-1-{[(3,5-DIMETHYLISOXAZOL-4-YL)AMINO]CARBONYL}-4,4-DIMETHYLPYRROLIDIN-3-YL{(1S)-1-[1-HYDROXY-2-OXO-2-{[(1R)-1-PHENYLETHYL]AMINO}ETHYL]PENTYL}CARBAMATE 132Q 135C 136G 137S 138C 139W 179N(G) 180G 181G 182L(Y) 248A 274M(L) 275D(N) 276H 277G(A) 302W (identity: 68.8 %/60.3 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:2bdl_A_1 identity=60.3%
queryA       114:APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKY: 213
                :** *** * ********************  ******   *** *  ** ******     * ** ** *  ****** * * ***  ***   **** *:
2bdl_A_1       1:APDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE--NDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMY:  98
SecStr          :  S EETTTTT      B  SSB HHHHHHHHHHHHHHHHHHS    B HHHHHHH TT--S TTB   HHHHHHHHHHHT EEBTTTS   SS      :    
ExpBur          :eeeebbbeeeebbbebeebeebebbbbbbbbbbbbbbbeeeeeeeeebbbbbbbbbbee--bebbeeeebbbbbebbeeeebbbeeeebebeeeeeeeeb:    
Contact         :                  b  bbbbb                                       bbbb                               

queryA       214:NPKYSVANDTGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYV: 312
                :**    *   *   **   ****  *** *** ******   ** **  * *    * *    * ** ****        ** *  ****** **  ** :
2bdl_A_1      99:NPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQK----GNKHWIIKNSWGENWGNKGYI: 194
SecStr          : GGGEEE    EEE  TT HHHHHHHHHHH  EEEEE   SHHHHT  SSEE  TT  TT   EEEEEEEEEEET----TEEEEEEE SB TTSTBTTEE:    
ExpBur          :eeebeebebebeeebeeeebebbeebbeebbbbbbbbbbebeebeebeeeebeeeebeeeeeebbbbbbbbbeee----eeebbbbbbbebeebeeebbb:    
Contact         :                                   b                         bbbb                        b          

queryA       313:KMAKDRRNHCGIASAASYPTV: 333
                : **    * ****  ** *  :
2bdl_A_1     195:LMARNKNNACGIANLASFPKM: 215
SecStr          :EEESSSSSGGGTTSS EEE  :    
ExpBur          :bbbbeeebbbbbbbebbbbee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123