[pdbjlvh2]Protein Model on 1ms6_A_1_B

Protein Model on 1ms6_A_1_B_1 (TEMPLATE: 1ms6 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(CATL1_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [217 aa]	Cathepsin S :CATS_HUMAN
2	b		B 1 (A)	non-polymer(BLN)	MORPHOLINE-4-CARBOXYLIC ACID [1S-(2-BENZYLOXY-1R-CYANO-ETHYLCARBAMOYL)-3-METHYL-BUTYL]AMIDE	132Q 136G 137S(A) 138C 139W 174G 176E(K) 179N 180G 181G 182L(F) 183M 251A 252G(R) 257L(F) 274M(V) 275D(N) 276H 302W (identity: 63.2 %/57.5 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:1ms6_A_1 identity=57.5%

queryA       115:PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ-GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKY: 213
                :* ******** ** ** ** ** ****** **** *   *** * *** *******    ** ***** *  ****  ** * **  **** *    * *:
1ms6_A_1       2:PDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQY: 101
SecStr          : S EETTTTT      B TTSB HHHHHHHHHHHHHHHHHHS    B HHHHHHHS GGGT  TTB   HHHHHHHHHHHT EEBTTTS   SS      :    
ExpBur          :eeebbbeeeebbbebbebeebebbbbbbbbbbbbbbbeeeeeeeebbbbbbbbbbbeeebebebbeeeebbebbebbbeeebbbbeeebebeeeeeeeeb:    
Contact         :                 b   bbbb                                   b b  bbbbb                              

queryA       214:NPKYSVANDTGFVDIP-KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYV: 312
                :  **  *        *   *  *  ***  ** **  ** * **  *  * * ** *      *********          *********   *  ** :
1ms6_A_1     102:DSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSC-TQNVNHGVLVVGYG----DLNGKEYWLVKNSWGHNFGEEGYI: 196
SecStr          : GGGEEE   EEEE  TT HHHHHHHHHHT  EEEEE   SHHHHH  SSEE  TT - S   EEEEEEEEE----EETTEEEEEEE SB TTSTBTTEE:    
ExpBur          :eeeeeebebeeeeebeeeebebbeebbbeebbbbbbbbbebeebeebeebbbebeeb-eeeeebbbbbbbbb----eeeeeebbbbbbbebeebbeebbb:    
Contact         :                                      bb    b                bbb                         b          

queryA       313:KMAKDRRNHCGIASAASYPTV: 333
                : **    *******  ***  :
1ms6_A_1     197:RMARNKGNHCGIASFPSYPEI: 217
SecStr          :EEE SSSSGGGTTTS EEEE :    
ExpBur          :bbbbeeebbbbbbbebbbbee:

Protein Model on 1ms6_A_1_B_1 (TEMPLATE: 1ms6 )

Input Residue Numbers for Focused Sites