[pdbjlvh2]Protein Model on 1ayv_A_1_B

Protein Model on 1ayv_A_1_B_1 (TEMPLATE: 1ayv )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(CATL1_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [215 aa]	CATHEPSIN K :CATK_HUMAN
2	b		B 1 (A)	non-polymer(IN6)	N-[2-[1-(N-BENZYLOXYCARBONYLAMINO)-3-METHYLBUTYL]THIAZOL-4-YLCARBONYL]-N'-(BENZYLOXYCARBONYL-L-LEUCINYL)HYDRAZIDE	131N 132Q 133G 134Q 135C 136G 137S 138C 139W 176E(D) 179N(G) 180G 181G 182L(Y) 274M(L) 275D(N) 276H 277G(A) 302W (identity: 68.4 %/60.3 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:1ayv_A_1 identity=60.3%

queryA       114:APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKY: 213
                :** *** * ********************  ******   *** *  ** ******     * ** ** *  ****** * * ***  ***   **** *:
1ayv_A_1       1:APDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE--NDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMY:  98
SecStr          :  S EEHHHHT      B  SSB HHHHHHHHHHHHHHHHHHS    B HHHHHHH TT--S TTB   HHHHHHHHHHHT EEBTTTS   SS      :    
ExpBur          :eeeebbbeeeebbbebeebeebebbbbbbbbbbbbbbbeeeeeeeeebbbbbbbbbbee--bebeeeeebbebbebbeeeebbbbeeebeeeeeeeeeeb:    
Contact         :                 bbbbbbbbb                                    b  bbbb                               

queryA       214:NPKYSVANDTGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYV: 312
                :**    *   *   **   ****  *** *** ******   ** **  * *    * *    * ** ****        ** *  ****** **  ** :
1ayv_A_1      99:NPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQK----GNKHWIIKNSWGENWGNKGYI: 194
SecStr          : GGGEEE    EEE  TT HHHHHHHHHHT  EEEEE   SHHHHT  SSEE  TT  TT   EEEEEEEEEESS----S EEEEEE SB TTSTTTSEE:    
ExpBur          :eeeeeebebebeeebeeeebebbbebbeebbbbbbbbbbebeebeebeeebbeeeebeeeeeebbbbbbbbbeee----eeebbbbbbbebeebeeebbb:    
Contact         :                                                             bbbb                        b          

queryA       313:KMAKDRRNHCGIASAASYPTV: 333
                : **    * ****  ** *  :
1ayv_A_1     195:LMARNKNNACGIANLASFPKM: 215
SecStr          :EEE SSSSGGGTTTS EEE  :    
ExpBur          :bbbbeeebbbbbbbebbbbee:

Protein Model on 1ayv_A_1_B_1 (TEMPLATE: 1ayv )

Input Residue Numbers for Focused Sites