Protein Model on 7m1y_A_1_E_1 (TEMPLATE: 7m1y )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(R1A_SARS2) A 1 (A) polymer(polypeptide(L)) [314 aa] Papain-like protease :R1A_SARS2
2 b E 1 (A) non-polymer(CL) CHLORIDE ION 1775S 1776Y 1777E 1868Y (identity: 100.0 %/99.7 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7m1y_A_1 identity=99.7%
queryA      1565:VRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGL:1664
                :****************************************************************************************************:
7m1y_A_1       5:VRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGL: 104
SecStr          :  EEEEEEESSSSS EEEEEETTS SHHHHSSEEETTEE TT    GGGTT EEEE   SHHHHHHHHHHHS   TTHHHHHHHHHHHHTTS   EETTE:    
ExpBur          :eeebebebbbbeeeeeeeebebeebbeeebeebbbebeebbeeebeeebeeeebbbebeeeebeebbeebbebeeeebbbebbebbeebeebebeebeeb:    

queryA      1665:TSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKG:1764
                :********* ******************************************************************************************:
7m1y_A_1     105:TSIKWADNNSYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKG: 204
SecStr          :E     TT HHHHHHHHHHTTS   BSSHHHHHHHHHHHHT  HHHHHHHHHHHT  TT    HHHHHHHHHHTBS TT EEEEEEEETTTEEEEEEEEG:    
ExpBur          :bbbeeeeebbbbbbbbbbbbbbebebebebbbebbeebeebebbebbbbbbbbbebebeeebebeebbeebbeebebeebebbbbeebeeeeeeeeeeeb:    

queryA      1765:VEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPIT:1864
                :****************************************************************************************************:
7m1y_A_1     205:VEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPIT: 304
SecStr          :GGGTEEES S HHHHHH EEEE TTSSEEEEEEEEEESSEEEEEEEEEEEEEETTS SEEEEEEE SSSEEEEEEEESSSEEEEETTEEEEESEEEEEEE:    
ExpBur          :bebbbbeeebbbeebbebbeeebeeeeebebbbbebebebbbbbbeeeeeebeeeebbbbbbbeeeeeebebebbbbeebbbbbbbeeeeeeeebebbbb:    
Contact         :          bbb                                                                                       

queryA      1865:DVFYKENSYTTTIK:1878
                :**************:
7m1y_A_1     305:DVFYKENSYTTTIK: 318
SecStr          :EEEEE SEEE    :    
ExpBur          :bbbbebeebebeee:    
Contact         :   b                                                                                                


Input Residue Numbers for Focused Sites

ex) 2,15,123