Protein Model on 7cmd_D_1_O_1 (TEMPLATE: 7cmd )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:4]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(R1A_SARS2) D 1 (D) polymer(polypeptide(L)) [307 aa] Non-structural protein 3 :R1AB_SARS2
2 b O 1 (D) non-polymer(TTT) 5-amino-2-methyl-N-[(1R)-1-naphthalen-1-ylethyl]benzamide 1725L 1726G 1727D 1811P 1827Y 1831Y 1832Q 1836Y 1864T (identity: 100.0 %/97.1 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7cmd_D_1 identity=97.1%
queryA      1564:EVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNG:1663
                :****************************************************************************************************:
7cmd_D_1       2:EVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNG: 101
SecStr          :   EEEEEEESSSSS EEEEEETTS HHHHHSSEEETTEE TTS   STTTT EEEE   SHHHHHHHHHHHS   TTHHHHHHHHHHHHTTS   EETT:    
ExpBur          :eeeebebebbbbeeeeeeeebbbeeebeeebeebbbebeebeeeebeeebeeeebbbeeeeeebeebbeebbeeeeeebbbbbbebbeebeebebeebee:    

queryA      1664:LTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLK:1763
                :****************************************************************************************************:
7cmd_D_1     102:LTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLK: 201
SecStr          :EE     TTTHHHHHHHHHHTTS   BSSHHHHHHHHHHTTT  HHHHHHHHHHTT  TT    HHHHHHHHHHTB   S EEEEEEE SSS EEEEEEE:    
ExpBur          :bbbbeeeeebbbbbbbbbbbbbbebebebebbeebbeebeebebbebbbbbbbbbebeeeebbebeebbeebbeebebeebebbbbeeeeeeeeeeeeee:    
Contact         :                                                             bbb                                    

queryA      1764:GVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPI:1863
                :*********************         **********************************************************************:
7cmd_D_1     202:GVEAVMYMGTLSYEQFKKGVQXXXXXXXXXTKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPI: 301
SecStr          :GGGGSEEES S HHHHHH B --------- EEEEEEESSEEEEEEEEEEEEEETTS SEEEEEESSTTT EEEEEEESSSEEEEETTEEEEESEEEEEE:    
ExpBur          :bbebbbbeeebbbeebbebbe---------eebbbebebbbbbbbbeeeeeebeeeebbbbbbbeeeeeebebebbbbeeebbbbbbeeeeeeeebebbb:    
Contact         :                                               b               b   bb   b                           

queryA      1864:TDVFYKENSYTTTIK:1878
                :***************:
7cmd_D_1     302:TDVFYKENSYTTTIK: 316
SecStr          :EEEEEE SEEE    :    
ExpBur          :bbbbbeeeeeebeee:    
Contact         :b                                                                                                   


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