Protein Model on 6q4r_A_1_CA_1 (TEMPLATE: 6q4r )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(AMPN_HUMAN) A 1 (A) polymer(polypeptide(L)) [855 aa] Endoplasmic reticulum aminopeptidase 1,Endoplasmic reticulum aminopeptidase 1 :ERAP1_HUMAN:ERAP1_HUMAN
2 b CA 1 (A) non-polymer(EDO) 1,2-ETHANEDIOL 881Q(R) 885K(N) 921F (identity: 33.3 %/36.3 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6q4r_A_1 identity=36.3%
queryA        71:WNRYRLPNTLKPDSYRVTLRPYLTPNDRGLYVFKGSSTVRFTCKEATDVIIIHSKKLNYTLSQGHRVVLRGVGGSQPPDIDKTELVEPTEYLVVHLKGS-: 169
                :**  ***    *  *       **        * *   *  *    *  ** **  *     *  *  **              *  *       *    :
6q4r_A_1      49:WNKIRLPEYVIPVHYDLLIHANLTT-----LTFWGTTKVEITASQPTSTIILHSHHL-----QISRATLRKXXXXRLSEEPLQVLEHPRQEQIALLAPEP: 138
SecStr          :   SS  SSEEEEEEEEEEEEETTT-----TEEEEEEEEEEEESS  SEEEEE SS -----EEEEEEEE ----   EEE EEEEETTTTEEEEE SS :    
ExpBur          :beeeebbeebebebbebbbebebee-----eebebebebebebeeebebbbbbbbeb-----eeeebbbee----eeeebebeebeeeebbbbbbebeee:    

queryA       170:LVKDSQYEMDSEFEGELADDLAGFYRSEYM--EGNVRKVVATTQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSNM-LPKGPSTP--LPEDPNW: 264
                :*     *       * *     *** * *   **  *   * **     **  ******** ** * *         * *** * *       * **   :
6q4r_A_1     139:LLVGLPYTVVIHYAGNLSETFHGFYKSTYRTKEGELR-ILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLVKSVTVAEGLIED---: 234
SecStr          :  TT  EEEEEEEEEE BSSSSEEEEEEEE TT  EE-EEEEEE TTTTGGGTS B  STTS BEEEEEEEE TT EEEESS EEEEEEEETTEEEE---:    
ExpBur          :beeeeebebbbebebebbebbbbbbebebebeeeeee-ebbbbbbbbbbbbbbbbbbbbbebbbbbebebebeeebebbbbbeeeeeeeeeeebbbb---:    

queryA       265:NVTEFHTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGDYALNVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWGLVTYRE: 364
                :    *  * ****** *** * *  * *    **     * *  *     ****      * *       ****** *    ***  ******** ****:
6q4r_A_1     235:---HFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKI--NQADYALDAAVTLLEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENWGLTTYRE: 329
SecStr          :---EE    SB GGG  EEEE  EEEEEE TTS EEEEEE GGGG--GG HHHHHHHHHHHHHHHHHHT    SSEEEEEEESS SSSEE  TTEEEEEG:    
ExpBur          :---ebeebeebbbbbbbbbbbebeeeeeebeeebebbbbbbeebb--ebbebbbebbbebbebbbebbebebebebbbbbbbbbbbeebbbbbbbbbbbb:    

queryA       365:NSLLFDPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTWNLKDLMVLNDVYRVMAVDALASSHPLSTPASEINT: 464
                :  ****   ** * *       ************** *************   *        *     *          * **** **** ***      :
6q4r_A_1     330:SALLFDAEKSSASSKLGITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYF-FGKCFDAMEVDALNSSHPVSTP---VEN: 425
SecStr          :GGT   TTT  HHHHHHHHHHHHHHHHHTTBTTTEEESSGGGTHHHHHHHHHHHHHHHHHH GGG GGGGT-HHHHHHHHHHHTSTT   SS  ---  S:    
ExpBur          :ebbbbeeeebebebebebbbebbbbbbbbbbbbbbbbebbebbbbbbbbbbbbbbbbbeebbeebebeebb-beebbebbebbbbebbbebbbe---bee:    

queryA       465:PAQISELFDAISYSKGASVLRMLSSFLSEDVFKQGLASYLHTFAYQNTIYLNLWDHLQEAVNNRSIQLPTTVRDIMNRWTLQMGFPVITVDTSTGT---L: 561
                :**** * **  ** ***  * **   ** * ** *   **    * **    ***                *   ** **** *** **  *  *     :
6q4r_A_1     426:PAQIREMFDDVSYDKGACILNMLREYLSADAFKSGIVQYLQKHSYKNTKNEDLWDSMASIXXXX-----VDVKTMMNTWTLQKGFPLITI-TVRGRNVHM: 519
SecStr          :HHHHHHTSSHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHTTTEEE HHHHHHHHHT ---------  HHHHHHHHHSS S EEEEE-EEETTEEEE:    
ExpBur          :beebbbbbeebbebbbbbbbbbbbeebeeeebeebbbebbeebeeebbebeebbebbeee---------eebeebbebbbebbbbbbbbb-beeeeebeb:    

queryA       562:SQEHFLLDPDSNVTRPSEFNYVWIVPITSIRDGRQQQDYWLIDVRAQNDLFSTSGNEWVLLNLNVTGYYRVNYDEENWRKIQTQLQRDHSAIPVINRAQI: 661
                : ***                * * ** * *          *        *      **   *    *** * *    *      *   * *     **  :
6q4r_A_1     520:KQEHYM----KGXXXXXDTGYLWHVPLTFITSKSDMVHRFLLKTKT-DVLILPEEVEWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRASL: 614
SecStr          :EEEE  ----  -----       EEEEEEETTEEEEEEEEE SSE-EEEE SS  S EEESGGG SS EEEETTTHHHHHHHHHHH GGGS HHHHHHH:    
ExpBur          :ebebbe----be-----eeeeebbbbbbbbbeeeeeeeeeebeeee-eebebeeeeebbbbbbebebbbbbbbeeebbeebbebbeeebeebeebbbbbb:    

queryA       662:INDAFNLASAHKVPVTLALNNTLFLIEERQYMPWEAALSSL-SYFKLM--FDRSEVYGPMKNYLKKQVTPLFIHFRNNTNNWREIPENLMDQYSEVNAIS: 758
                :** ** * *  *     **   * *  *   **    *  *    ***   *  **    *  *      *          *                  :
6q4r_A_1     615:INNAFQLVSIGKLSIEKALDLSLYLKHETEIMPVFQGLNELIPMYKLMEKRDMNEVETQFKAFLIRLLRDLI-----DKQTWTD-EGSVSERMLRSQLLL: 708
SecStr          :HHHHHHHHHTTSS HHHHHHHHGGGGG   HHHHHHHHHHHHHHHHHHHTSS HHHHHHHHHHHHHHHHHHH-----HH  SSS- S HHHHHHHHHHHH:    
ExpBur          :bbbbbbbbeeeebebeebbebbbbbeebeebbbbbbbbebbeebbbbbbbeebeebbeebbebbbebbeebb-----eebebee-eeebeebbbbbebbb:    

queryA       759:TACSNGVPECEEMVSGLFKQWMENPNNNPIHPNLRSTVYCNAIAQGGEEEWDFAWEQFRNATLVNEADKLRAALACSKELWILNRYLSYTLNPDLIRKQD: 858
                : **      *     * *  * *   *          *   *      * ***            *      **        *   *      * *  * :
6q4r_A_1     709:LACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVF--AVGAQSTEGWDFLYSKYQFSLSSTEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQE: 806
SecStr          :HHHHTT HHHHHHHHHHHHHHHHTTT     HHHHHHHH--HHHTTSHHHHHHHHHHHTT   HHHHHHHHHHHTT   HHHHHHHHHHHHHTSSS GGG:    
ExpBur          :bbbebebeebbeebebebeebeeeeeeeebbbbbbbbbb--bbbbeeeebbebbbeebeebebbbbeebbbebbbbbeeeebbeebbebbeebeebbbbb:    

queryA       859:ATSTIISITNNVIGQGLVWDFVQSNWKKLFNDYGGGSFSFSNLIQAVTRRFSTEYELQQLEQFKKDNEETGFGSGTRALEQALEKTKANIKWVKENKEVV: 958
                :       *  *  *  * * *   ** **      ** *        *  ***   *     *     *   **  *   *  *    ** *   *    :
6q4r_A_1     807:FPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRTRLEEVKGFFSSLKEN--GSQLRCVQQTIETIEENIGWMDKNFDKI: 904
SecStr          :HHHHHHHHHHSTTTHHHHHHHHHHTHHHHHHHH TT HHHHHHHHHHHTT  S  - HHHHHHHHTTGGG--TTT HHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :bbebbebbbebeebeebbbebbeeebeebbeebebbbebbbebbbbbbebbbeee-beebeebbeebeee--bbebebbebbbbbbebbbebbeebeeeb:    
Contact         :                      b   b                                   b                                     

queryA       959:LQWF: 962
                :  * :
6q4r_A_1     905:RVWL: 908
SecStr          :HHHH:    
ExpBur          :eebb:    


Input Residue Numbers for Focused Sites

ex) 2,15,123