Protein Model on 6m8p_Q_1_PM_1 (TEMPLATE: 6m8p )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:17]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(AMPN_HUMAN) Q 1 (Q) polymer(polypeptide(L)) [861 aa] Endoplasmic reticulum aminopeptidase 1 :ERAP1_HUMAN
2 b PM 1 (Q) non-polymer(NAG) 2-acetamido-2-deoxy-beta-D-glucopyranose 450A(N) 942E (identity: 50.0 %/36.5 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6m8p_Q_1 identity=36.5%
queryA        71:WNRYRLPNTLKPDSYRVTLRPYLTPNDRGLYVFKGSSTVRFTCKEATDVIIIHSKKLNY---TLSQGHRVVL--RGVGGSQPPDIDKTELVEPTEYLVVH: 165
                :**  ***    *  *       **        * *   *  *    *  ** **  *     **  *    *          *      *  * * * * :
6m8p_Q_1      33:WNKIRLPEYVIPVHYDLLIHANLTT-----LTFWGTTKVEITASQPTSTIILHSHHLQISRATLRKGXXXXLSEEPLQVLEHPRQEQIALLAP-EPLLVG: 126
SecStr          :   SS  TTEEEEEEEEEEEEETTT-----TEEEEEEEEEEEESS  SEEEEE  S EEEEEEEEE ---- EEEE EEEEETTTTEEEEE S-S   TT:    
ExpBur          :eeeeebbebbebebbbbebebbbee-----eebebbbebebebeeebebbbbbbbebeeeebbbebe----eeeeebeeeebeebbbbbbebe-eebeee:    

queryA       166:LKGSLVKDSQYEMDSEFEGELADDLAGFYRSEYM--EGNVRKVVATTQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSNMLPKGPSTPLPEDPN: 263
                :*    *            * *     *** * *   **  *   * **     **  ******** ** * *         * *** *   *    *   :
6m8p_Q_1     127:LPYTVV--------IHYAGNLSETFHGFYKSTYRTKEGELR-ILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNM-PLVKSVTVAEGLI: 216
SecStr          : EEEEE--------EEEEE  BSSSSEEEEEEEE TTS EE-EEEEEE TTTTGGGTS B  STTS BEEEEEEEE TT EEEESS- EEEEE  TTT E:    
ExpBur          :eebbbb--------bebebebbebbbbbbebbbebeeeeee-ebbbbbbbbbbbbbbbbbbbbbebbbbbbbbbebeeebebbbbb-eeeeeeebeeebb:    

queryA       264:WNVTEFHTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGDYALNVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWGLVTYR: 363
                :     *  * ****** *** * *  * *    **     * *  *     ****      * *       ****** *    ***  ******** ***:
6m8p_Q_1     217:ED--HFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKI--NQADYALDAAVTLLEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENWGLTTYR: 312
SecStr          :EE--EEEE  SB GGG  EEEE  EEEEEE TT  EEEEEE GGGG--GG HHHHHHHHHHHHHHHHHHT    SSEEEEEEESS SSSEE  TTEEEEE:    
ExpBur          :bb--bbeebeebbbbbbbbbbbebeeeeeebeeebebbbbbbeebb--ebbebbbebbbebbebbbebbebebebebbbbbbbbbbbeebbbbbbbbbbb:    

queryA       364:ENSLLFDPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTWNLKDLMVLNDVYRVMAVDALASSHPLSTPASEIN: 463
                :*  ****   ** * *       ************** *************   *        *     *          * **** **** ***     :
6m8p_Q_1     313:ESALLFDAEKSSASSKLGITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYF-FGKCFDAMEVDALNSSHPVSTP---VE: 408
SecStr          :HHHH   TTT  HHHHHHHHHHHHHHHHHTTBTTTEEESSGGGTHHHHHHHHHHHHHHHHHH TTT TTTTT-THHHHHHHHHHTSTT   SS  ---  :    
ExpBur          :bebbbeeeebbbbebebebbbebbbbbbbbbbbbbbbbebbebbbbbbbbbbbbbbbbbeebbeebebeeeb-bbebbebbebbbbebbbebbbe---be:    
Contact         :                                                                                      b             

queryA       464:TPAQISELFDAISYSKGASVLRMLSSFLSEDVFKQGLASYLHTFAYQNTIYLNLWDHLQEAVNNRSIQLPTTVRDIMNRWTLQMGFPVITVDTSTGT---: 560
                : **** * **  ** ***  * **   ** * ** *   **    * **    ***                *   ** **** *** **  *  *    :
6m8p_Q_1     409:NPAQIREMFDDVSYDKGACILNMLREYLSADAFKSGIVQYLQKHSYKNTKNEDLWDSMA-SIGGGGVD----VKTMMNTWTLQKGFPLITI-TVRGRNVH: 502
SecStr          :SHHHHHHTSSHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHTTTEEE HHHHHHHHH-TT  SS  ----HHHHHHHHHSS S EEEEE-EEETTEEE:    
ExpBur          :ebbebbbbbbebbebbbbbbbbbbbeebeeeebeebbbebbeebeeeebebeebbebbe-eeeeeeee----beebbebbbeeebbbbbbb-eeeeeebe:    

queryA       561:LSQEHFLLDPDSNVTRPSEFNYVWIVPITSIRDGRQQQDYWLIDVRAQNDLFSTSGNEWVLLNLNVTGYYRVNYDEENWRKIQTQLQRDHSAIPVINRAQ: 660
                :  ***                * * ** * *          *        *      **   *    *** * *    *      *   * *     ** :
6m8p_Q_1     503:MKQEHYM----KGXXXXXDTGYLWHVPLTFITSKSDMVHRFLLKTKT-DVLILPEEVEWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRAS: 597
SecStr          :EEEEE  ----  -----       EEEEEEETTEEEEEEEEE SSE-EEEE SS  S EEESGGG SSSEEEETTTHHHHHHHHHHHHGGGS HHHHHH:    
ExpBur          :bebebbe----ee-----eeeeebbbbbbbbbeeeeeeeeeebeeee-eebebeeebebbbbbbbbebbbbbbbeeebbeebbebbeeebeebeebbbbb:    

queryA       661:IINDAFNLASAHKVPVTLALNNTLFLIEERQYMPWEAALSSL-SYFKLM--FDRSEVYGPMKNYLKKQVTPLFIHFRNNTNNWREIPENLMDQYSEVNAI: 757
                : ** ** * *  *     **   * *  *   **    *  *    ***   *  **    *  *      *          *                 :
6m8p_Q_1     598:LINNAFQLVSIGKLSIEKALDLSLYLKHETEIMPVFQGLNELIPMYKLMEKRDMNEVETQFKAFLIRLLRDLI-----DKQTWTD-EGSVSERMLRSQLL: 691
SecStr          :HHHHHHHHHTTTSS HHHHHHHHGGGGG   HHHHHHHHHHHHHHHHHHHTSS HHHHHHHHHHHHHHHHHHH-----HH  SSS- S HHHHHHHHHHH:    
ExpBur          :bbbbbbbbbeeeebebeebbebbebbbebeebbbbebbbebbbebbbbbbbeebeebbeebeebbbebbeebb-----eebebee-eeebbeebbbbebb:    

queryA       758:STACSNGVPECEEMVSGLFKQWMENPNNNPIHPNLRSTVYCNAIAQGGEEEWDFAWEQFRNATLVNEADKLRAALACSKELWILNRYLSYTLNPDLIRKQ: 857
                :  **      *     * *  * *   *          *   *      * ***            *      **        *   *      * *  *:
6m8p_Q_1     692:LLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVF--AVGAQSTEGWDFLYSKYQFSLSSTEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQ: 789
SecStr          :HHHHHTT HHHHHHHHHHHHHHHHTTT S   HHHHHHHH--HHHTTSHHHHHHHHHHHHH   HHHHHHHHHHHHT   HHHHHHHHHHHHHTSSS GG:    
ExpBur          :bbbbebebeebbeebebebeebeeeeeeeebebbbbbbbb--bbbbeeeebbebbbeebeebebbbeeebbbebbbbbeeeebbeebbebbbeeeebebb:    

queryA       858:DATSTIISITNNVIGQGLVWDFVQSNWKKLFNDYGGGSFSFSNLIQAVTRRFSTEYELQQLEQFKKDNEETGFGSGTRALEQALEKTKANIKWVKENKEV: 957
                :        *  *  *  * * *   ** **      ** *        *  ***   *     *     *   **  *   *  *    ** *   *   :
6m8p_Q_1     790:EFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRTRLEEVKGFFSSLKEN--GSQLRCVQQTIETIEENIGWMDKNFDK: 887
SecStr          :GHHHHHHHHHHSTTTHHHHHHHHHHTHHHHHHHH TT HHHHHHHHHHHTT  SHHHHHHHHHHHHHTGGG--TTT HHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :bbbebbbbbbebeebbebbbebbeeebeebbeebbbbbebbeebbbbbbebbbeeeebeebeebbeebeee--bbebebbebbbbbbebbbebbeebbee:    
Contact         :                                                                                    b               

queryA       958:VLQWF: 962
                :   * :
6m8p_Q_1     888:IRVWL: 892
SecStr          :HHHHH:    
ExpBur          :beebb:    


Input Residue Numbers for Focused Sites

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