Protein Model on 5c97_A_1_Q_1 (TEMPLATE: 5c97 )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(AMPN_HUMAN) A 1 (A) polymer(polypeptide(L)) [860 aa] Leucyl-cystinyl aminopeptidase :LCAP_HUMAN
2 b Q 1 (A) non-polymer(NAG) 2-acetamido-2-deoxy-beta-D-glucopyranose 519D 523E (identity: 100.0 %/36.4 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5c97_A_1 identity=36.4%
queryA        71:WNRYRLPNTLKPDSYRVTLRPYLTPNDRGLYVFKGSSTVRFTCKEATDVIIIHSKKLNYTLSQGHRVVLRGVGGSQPPDIDKTELVEPTEYLVVHLKGSL: 170
                :*   ***    *  *   * * **        * ** *        *  ** **   *       **       **       *         *     *:
5c97_A_1      40:WAQIRLPTAVVPLRYELSLHPNLTS-----MTFRGSVTISVQALQVTWNIILHSTGHNIS-----RVTFMSAVSSQEKQAEILEYAYHGQIAIVAPE-AL: 128
SecStr          :  SSS  SSB   EEEEEEEEETTT-----TEEEEEEEEEEEBSS EEEEEEE  S B S----- B B  SS S  B  EEEEETTTTEEEEEEEE-EE:    
ExpBur          :eeeeebbebbebeebbbbbebebee-----eebebebebebebeeebebbbbbbeebeee-----ebbbeeeeeeeeeebeeeeeeeebbbbbebee-eb:    

queryA       171:VKDSQYEMDSEFEGELADDLAGFYRSEYM-EGNVRKVVATTQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSNMLPKGPSTPLPEDPNWNVTEF: 269
                :     *    *          ***   *  * *  *  * **     **  ******** ** * *  *     ****** **  *  *  *      **:
5c97_A_1     129:LAGHNYTLKIEYSANISSSYYGFYGFSYTDESNEKKYFAATQFEPLAARSAFPCFDEPAFKATFIIKIIRDEQYTALSNM-PKKSSVVL--DDGLVQDEF: 225
SecStr          : TT EEEEEEEEEEE BSSSSEEEEEEEE SSS EEEEEEEE TTTTHHHHS B  SSSS BEEEEEEEEESS EEEESS- EEEEEE --TTSEEEEEE:    
ExpBur          :eeeeebebbbbbebebeeeeebbbbbebeeeeeeebbbbbbbbebbbbbebbbbbbbbebbbbbebebbbeeebebbbbb-eeeeeeee--eeebbebeb:    

queryA       270:HTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGDYALNVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWGLVTYRENSLLF: 369
                :    ****** **** *      *  ** *  * * *  *   *  ***  *   * **       *** * *    *** ********* * **  ** :
5c97_A_1     226:SESVKMSTYLVAFIVGEMKNL-SQDVNGTLVSIYAVPEKIGQVH--YALETTVKLLEFFQNYFEIQYPLKKLDLVAIPDFEAGAMENWGLLTFREETLLY: 322
SecStr          :    SB GGG  EEEE  B  -EEEETTEEEEEEE GGGGGG H--HHHHHHHHHHHHHTTTS      SEEEEEEESSTT      TTEEEEEGGGT  :    
ExpBur          :eebebbbbbbbbbbbbebeee-eeebeebebbbbbbeeebeebe--bbbebbbebbebbeebbebebebebbbbbbbbbeebbebbbbbbbbbeeeebeb:    

queryA       370:DPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTWNLKDLMVLNDV----YRVMAVDALASSHPLSTPASEINTP: 465
                :*   **      *   ***************  ************   **            * *    *        *  * * **** *   *     :
5c97_A_1     323:DSNTSSMADRKLVTKIIAHELAHQWFGNLVTMKWWNDLWLNEGFATFMEYFSLEKI-----FKELSSYEDFLDARFKTMKKDSLNSSHPIS---SSVQSS: 414
SecStr          : TTT  HHHHHHHHHHHHHHHHHHHBTTTBEESSGGGHHHHHHHHHHHHHHHHHHH----- TTS HHHHHHHHHHHHHHHHSSSS   S ---    SS:    
ExpBur          :eeeebbbeebbebbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbeee-----beebbbbbbbbebbbebbeebbbebbeebb---eebeee:    

queryA       466:AQISELFDAISYSKGASVLRMLSSFLSEDVFKQGLASYLHTFAYQNTIYLNLWDHLQEAVNNRSIQLPTTVRDIMNRWTLQMGFPVITVDTSTGTL--SQ: 563
                : ** * **  ** ** * * **   ******      ***   *       ***   *  *         *   *  **** ***  **      *   *:
5c97_A_1     415:EQIEEMFDSLSYFKGSSLLLMLKTYLSEDVFQHAVVLYLHNHSYASIQSDDLWDSFNEVTNQ-----TLDVKRMMKTWTLQKGFPLVTVQKKGKELFIQQ: 509
SecStr          :HHHHTT  HHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHTTTSEE THHHHHHHSS SSS----- SS TTSHHHHHHSSS EEEEEE  SS  EEEE:    
ExpBur          :eebeebeeebbbebbbbbbbbbbeebeeeebbebbbebbeeeeeeebebeebbebbbebeee-----eeeebebbebbbebbbbbbbbbebeeebbebeb:    
Contact         :                                                     b   b                                          

queryA       564:EHFLLDPDSNVTRPSEFNYVWIVPITSIRDGRQQQDYWLIDV--RAQNDLFSTSGNEWVLLNLNVTGYYRVNYDEENWRKIQTQLQRDHSAIPVINRAQI: 661
                :* * *         *   * *  *      **    *               *    **  * *  *** * *    *     **           **  :
5c97_A_1     510:ERFFLNM-XXXXXXSDTSYLWHIPLSYVTEGRNYSKYQSVSLLDKKSGVINLTEEVLWVKVNINMNGYYIVHYADDDWEALIHQLKINPYVLSDKDRANL: 608
SecStr          :EE     -------        EE  EEEE GGG EEEE  EE SSEEE   SS  SEEEESGGG SSSEEEE HHHHHHHHHHHHH GGGS HHHHHHH:    
ExpBur          :ebbebee-------eeeeeebbbbbbbbbbeeeeeeeeeeeebeeeeeeeebeeebebbbbbbebbbbbbbbbeeebbebbbebbeeebeebebbbbbbb:    

queryA       662:INDAFNLASAHKVPVTLALNNTLFLIEERQYMPWEAALSSLSYFKLMFDRSEVYGPMKNYLKKQVTPLFIHFRNN----------TNNWREIPENLMDQY: 751
                :**  * **   ***   *      *  *    *   **       *     *  * *       **  *    *           *   **    *    :
5c97_A_1     609:INNIFELAGLGKVPLKRAFDLINYLGNENHTAPITEALFQTD---LIYNLLEKLGYM-DLASRLVTRVFKLLQNQIQQQTWTDEGTPSMRELRSALLE--: 702
SecStr          :HHHHHHHHHHSSS HHHHHHHGGGGGG   HHHHHHHHHHHH---HHHHHHHHSS H-HHHHHHHHHHHHHTHHHHHT  SS  S HHHHHHHHHHHH--:    
ExpBur          :bbbbbbbbbbeebebbebbebbebbeebeebbbbebbbebbe---ebbbbbbbbeee-ebbeebbeebbebbeebbeebebeeeeebbebebbebbbe--:    

queryA       752:SEVNAISTACSNGVPECEEMVSGLFKQWMENPNNNPIHPNLRSTVYCNAIAQGGEEEWDFAWEQFRNATLVNEADKLRAALACSKELWILNRYLSYTLNP: 851
                :        **      *      **  **              **            * *            *  *   *** *     *       ** :
5c97_A_1     703:-------FACTHNLGNCSTTAMKLFDDWMASNGTQSLPTDVMTTVF--KVGAKTDKGWSFLLGKYISIGSEAEKNKILEALASSEDVRKLYWLMKSSLNG: 793
SecStr          :-------HHHHTT STHHHHHHHHHHHHHHTTT S   GGGHHHHH--HHHTTSHHHHHHHHHHHTT   TTHHHHHHHHHHT   HHHHHHHHHHHHHT:    
ExpBur          :-------bbbebebeebbebbeeebeebbeeeeeeebbbbbbbbbb--bbbbeeeebbeebbebbeeeeebeebebbbebbbbbeeeebbeebbebbbee:    

queryA       852:DLIRKQDATSTIISITNNVIGQGLVWDFVQSNWKKLFNDYGGGSFSFSNLIQAVTRRFSTEYELQQLEQFKKDNEETGFGSGTRALEQALEKTKANIKWV: 951
                :*  * *     *        *  * ****  ** **      **    *     *  ***   *     *     *  *    *    ***    ** * :
5c97_A_1     794:DNFRTQKLSFIIRTVGRHFPGHLLAWDFVKENWNKLVQKFPLGSYTIQNIVAGSTYLFSTKTHLSEVQAFFENQSEATF--RLRCVQEALEVIQLNIQWM: 891
SecStr          :SSS TTTHHHHHHHHHHSHHHHHHHHHHHHHTHHHHHHHS TTSTTHHHHHHHHHTT   HHHHHHHHHHHHTT HHHH--T HHHHHHHHHHHHHHHHH:    
ExpBur          :eebeeebbbebbebbbeeeebbeebbebbeeebeebeeebeeeeeebebbbebbbebbbeeeebeebeebbeeeeeebb--ebeebeebbbebeebebbb:    

queryA       952:KENKEVVLQWF: 962
                :  *      * :
5c97_A_1     892:EKNLKSLTWWL: 902
SecStr          :HHHTTTGGG  :    
ExpBur          :eebbebbeeeb:    


Input Residue Numbers for Focused Sites

ex) 2,15,123