Protein Model on 5ab2_A_1_F_1 (TEMPLATE: 5ab2 )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(AMPN_HUMAN) A 1 (A) polymer(polypeptide(L)) [897 aa] ENDOPLASMIC RETICULUM AMINOPEPTIDASE 2 :ERAP2_HUMAN
2 b F 1 (F) branched(oligosaccharide) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 128N 181E(D) (identity: 50.0 %/36.6 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5ab2_A_1 identity=36.6%
queryA        71:WNRYRLPNTLKPDSYRVTLRPYLTPNDRGLYVFKGSSTVRFTCKEATDVIIIHSKKL---NYTLS--QGHRVVLRG--VGGSQPPDIDKTELVEPTEYLV: 163
                :*   ***    *  *     * **  *     *  *         **  ** *** *   * **      *    *        *      *  * * * :
5ab2_A_1      64:WQELRLPSVVIPLHYDLFVHPNLTSLD-----FVASEKIEVLVSNATQFIILHSKDLEITNATLQSEEDSRYMKPGKELKVLSYPAHEQIALLVP-EKLT: 157
SecStr          :   SS  SSEEEEEEEEEEEEETTTTE-----EEEEEEEEEEESS  SEEEEE SS EEEEEE   SS GGG SS  B EEEEEGGGTEEEEE S-S   :    
ExpBur          :eeeeebbebbebebbebebebebeeee-----bebebebbbebeeebeebbbbbeebeeeebebebeebeebeeeeeebeebebeeebbbbbebe-eebe:    
Contact         :                                                            b                                       

queryA       164:VHLKGSLVKDSQYEMDSEFEGELADDLAGFYRSEYME-GNVRKVVATTQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSNMLPKGPSTPLP---: 259
                : ***        *     *   * *   *** * *   *      * *      **  *******  ** * *         ***** **     *    :
5ab2_A_1     158:PHLK--------YYVAMDFQAKLGDGFEGFYKSTYRTLGGETRILAVTDFEPTQARMAFPCFDEPLFKANFSIKIRRESRHIALSNM-PKVKTIELEGGL: 248
SecStr          :TT E--------EEEEEEEEEE BSSSSEEEEEEEE TTS EEEEEEEE TTT GGGTS B  STT  BEEEEEEEE TT EEEESS- EEEEEE TTS :    
ExpBur          :eeee--------bebebebeeebeeebebbbebebebeeeeeeebbbbbbbbbbbbbbbbbbbbbebbbebbbebebeeebebbbbb-eeeeeeeeeeee:    
Contact         :                 b                                                                                  

queryA       260:-EDPNWNVTEFHTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGDYALNVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWG: 358
                : **       * ** ****** * **  *       * **   * * *      *  ***      * *     *  *** * * *  ***  *******:
5ab2_A_1     249:LED------HFETTVKMSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPDKRNQTH--YALQASLKLLDFYEKYFDIYYPLSKLDLIAIPDFAPGAMENWG: 340
SecStr          :EEE------EE    SB GGG  EEEE  EEEEEE TTS EEEEEE GGGGGGGH--HHHHHHHHHHHHHHHHHT    SSEEEEEEESS SSSEE  TT:    
ExpBur          :bbb------bbeebeebbbbbbbbbbbbbeebebebeeebebbbbbbeebeebbe--bbbebbeebbebbbebbebebebebbbbbbbbbbbeebbbbbb:    

queryA       359:LVTYRENSLLFDPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTWNLKDLMVLNDVYRVMAVDALASSHPLSTP: 458
                :* **** ******  ** * *  *  **************** ***** ** **** * *        *     *   **    *   * * ** * * *:
5ab2_A_1     341:LITYRETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGNLVTMEWWNDIWLKEGFAKYMELIAVNATYPELQFDDYF-LNVCFEVITKDSLNSSRPISKP: 439
SecStr          :EEEEEHHHH   TTT  HHHHHHHHHHHHHHHHHHHBTTTBEESSGGGTHHHHHHHHHHHHHHHHHH GGG HHHHH-HHHHHHHHTTTTSTT   SS  :    
ExpBur          :bbbbbbebbbbeeebbbbeeebebbbbbbbbbbbbbbbbbbbbebbebbbbbbbbbbbbbbbbbeebbeebebeeeb-bebbbebbeebbbebbbebbee:    

queryA       459:ASEINTPAQISELFDAISYSKGASVLRMLSSFLSEDVFKQGLASYLHTFAYQNTIYLNLW-----------------DHLQEAVNNRSIQL---PTTVRD: 538
                :*    ** ** * **  ** ***  * **  ** *  *  *   **  * * *     **                  *                  *  :
5ab2_A_1     440:A---ETPTQIQEMFDEVSYNKGACILNMLKDFLGEEKFQKGIIQYLKKFSYRNAKNDDLWSSLSNSXXXXXXXXXXXXHSDPKMTSNMLAFLGENAEVKE: 536
SecStr          : --- SHHHHHTT STTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEE HHHHHHHHH  ------------  SS   STTHHHHHHHHHHHH:    
ExpBur          :b---eeeeebbbbbbebbebbbbbbbbbbbeebeeeebeebbbebbeebeeebbebeebbebbbee------------eeeeeeeeeeeeeeeebebbee:    

queryA       539:IMNRWTLQMGFPVITV--DTSTGTLSQEHFLL-----DPDSNVTRPSEFNYVWIVPITSIRDGRQQQDYWLIDVRAQNDLFSTSGNEWVLLNLNVTGYYR: 631
                : *  **** * *   *  *     * ** **      **     *     * *  * *                     *       **  *    *** :
5ab2_A_1     537:MMTTWTLQKGIPLLVVKQDGCSLRLQQERFLQGVFQEDPE---WRALQERYLWHIPLTYSTSSSNVIHRHILKSKT-DTLDLPEKTSWVKFNVDSNGYYI: 632
SecStr          :HHHHHHHS S EEEEEEESSSEEEE EEE  SS  TT TT---HHHHTSS    EEEEEEESS    EEEEE SS -EEEE SS  S EEESGGG SS E:    
ExpBur          :bbebbbebebbbbbbbeeeeeebebebbbbbbbbbeeeee---beebbeebebbbbbbbbbeeeeeeeeeebeeee-eebebeeebebbbbbbbbebbbb:    

queryA       632:VNYDEENWRKIQTQLQRDHSAIPVINRAQIINDAFNLASAHKVPVTLALNNTLFLIEERQYMPWEAALSSLSYFKLMFDR---SEVYGPMKNYLKKQVTP: 728
                :* *    *    ***   *       *   * * * *  *       **  *  *  *         ** *  *  * **   *      * **     *:
5ab2_A_1     633:VHYEGHGWDQLITQLNQNHTLLRPKDRVGLIHDVFQLVGAGRLTLDKALDMTYYLQHETSSPALLEGLSYLESFYHMMDRRNISDISENLKRYLLQYFKP: 732
SecStr          :EEEETTHHHHHHHHHHH GGGS HHHHHHHHHHHHHHHHTTSS HHHHHHHGGGGGG   HHHHHHHHHHHHHHHHHHHHTT HHHHHHHHHHHHHTTHH:    
ExpBur          :bbbeeebbeebbebbeeebeebeebbbbbbbbbbbbbbbbebbebeebbebbebbeebeebbbbbbbbebbeebbebbebeebeebbebbbebbbebbee:    

queryA       729:LFIHFRNNTNNWREIPENLMDQYSEVNAISTACSNGVPECEEMVSGLFKQWMENPNNNPIHPNLRSTVYCNAIAQGGEEEWDFAWEQFRNATLVNEADKL: 828
                :           *        *          **      *      ** ****      *       **           *    **        *  * :
5ab2_A_1     733:VI-----DRQSWSD-KGSVWDRMLRSALLKLACDLNHAPCIQKAAELFSQWMESSGKLNIPTDVLKIVY--SVGAQTTAGWNYLLEQYELSMSSAEQNKI: 824
SecStr          :HH-----HH  SS - S HHHHHHHHHHHHHHHHTT HHHHHHHHHHHHHHHTTTTSS   GGGHHHHH--HHHTTSHHHHHHHHHHHHH S HHHHHHH:    
ExpBur          :bb-----eebebbe-eeebbebbbbeebbebbbebeeeebeeebeebbeebbebeeeeebebbbbebbb--bbbbeeeebbebbbebbeebbbbbbbebb:    

queryA       829:RAALACSKELWILNRYLSYTLNPDLIRKQDATSTIISITNNVIGQGLVWDFVQSNWKKLFNDYGGGSFSFSNLIQAVTRRFSTEYELQQLEQFKKDNEET: 928
                :  **  **    *            *  *        *     ** * ****  **  *      **      *   *  **    **    *    *  :
5ab2_A_1     825:LYALSTSKHQEKLLKLIELGMEGKVIKTQNLAALLHAIARRPKGQQLAWDFVRENWTHLLKKFDLGSYDIRMIISGTTAHFSSKDKLQEVKLFFESLEAQ: 924
SecStr          :HHHTTS   HHHHHHHHHHHHHTSSS GGGHHHHHHHHHHSHHHHHHHHHHHHHTHHHHHHHS TTSHHHHHHHHHHHTT  SHHHHHHHHHHHHHHTTT:    
ExpBur          :bebbbbbeeeebbeebbebbbeeeebebbbbbbbbebbbeeeebbebbbebbeeebeebeeebebbbebbbebbebbbbbbbbeebbebbeebbeebeee:    

queryA       929:GFGSGTRALEQALEKTKANIKWVKENKEVVLQWFTENSK: 967
                :  **        **    ****   *      *   *  :
5ab2_A_1     925:--GSHLDIFQTVLETITKNIKWLEKNLPTLRTWLMVNTR: 961
SecStr          :--T   THHHHHHHHHHHHHHHHHTTHHHHHHHHHHHT :    
ExpBur          :--ebebebbebbbbbbebbbebbeebbeebeebbeebee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123