Protein Model on 4fyq_A_2_B_2 (TEMPLATE: 4fyq )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(AMPN_HUMAN) A 2 (A) polymer(polypeptide(L)) [892 aa] Aminopeptidase N :AMPN_HUMAN
2 b B 2 (B) branched(oligosaccharide) beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 84S 85Y 86R 108T 110R 234N 271T (identity: 100.0 %/99.1 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:4fyq_A_2 identity=99.1%
queryA        68:SKAWNRYRLPNTLKPDSYRVTLRPYLTPNDRGLYVFKGSSTVRFTCKEATDVIIIHSKKLNYTLSQGHRVVLRGVGGSQPPDIDKTELVEPTEYLVVHLK: 167
                :****************************************************************************************************:
4fyq_A_2       4:SKAWNRYRLPNTLKPDSYRVTLRPYLTPNDRGLYVFKGSSTVRFTCKEATDVIIIHSKKLNYTLSQGHRVVLRGVGGSQPPDIDKTELVEPTEYLVVHLK: 103
SecStr          :  GGGSSS  SSEEEEEEEEEEEE  S  TTS  EEEEEEEEEEEESS  SEEEEE  S EE  BTTBSEEEEESTT     EEEEEEETTTTEEEEEES:    
ExpBur          :eeeeeeeebeebbebeebebebbbebeeeeeeebbbebebbbebbbeeebebbbbbbeebebeeeeeeebbbeebeebebeebeebeebeebbbbbbbbe:    
Contact         :                bbb                     b b                                                         

queryA       168:GSLVKDSQYEMDSEFEGELADDLAGFYRSEYMEGNVRKVVATTQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSNMLPKGPSTPLPEDPNWNVT: 267
                :****************************************************************************************************:
4fyq_A_2     104:GSLVKDSQYEMDSEFEGELADDLAGFYRSEYMEGNVRKVVATTQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSNMLPKGPSTPLPEDPNWNVT: 203
SecStr          :S   TTEEEEEEEEEEEE  SSSSEEEEEEEEETTEEEEEEEEE TTTTGGGTS B  STT  BEEEEEEEEETTSEEEESS BSS  EE TT TTEEEE:    
ExpBur          :eebeeeeebbbebebebebbeebbbbbbbbbeeeeeebbbbbbbbbbbbbbbbbbbbbbbbbbbebebbbbbbeebebbbbbeeeeeeeebeeeeebeeb:    
Contact         :                                                                  b                                 

queryA       268:EFHTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGDYALNVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWGLVTYRENSL: 367
                :****************************************************************************************************:
4fyq_A_2     204:EFHTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGDYALNVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWGLVTYRENSL: 303
SecStr          :EB    SB GGG  EEEE  EEEEEE TTS EEEEEE HHHHHTTTTHHHHHHHHHHHHHHHHHTT    SSEEEEEEESS SSSEE  TTEEEEEHHHH:    
ExpBur          :ebeebbebbbbbbbbbbbebeeeeeebeeebebbbbbbbebbeebbbebbbebbbebbeebbebbebebebebbbbbbbbbbeeebbbbbbbbbbbbbbb:    
Contact         :   b                                                                                                

queryA       368:LFDPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTWNLKDLMVLNDVYRVMAVDALASSHPLSTPASEINTPAQ: 467
                :****************************************************************************************************:
4fyq_A_2     304:LFDPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTWNLKDLMVLNDVYRVMAVDALASSHPLSTPASEINTPAQ: 403
SecStr          :   TTTS HHHHHHHHHHHHHHHHHHHBTTTEEESSGGGTHHHHHHHHHHHHHHHHHH TTS GGGGHHHHTHHHHHHHHTSTT   SS  GGG  SHHH:    
ExpBur          :bbbeebbbeebebebbbbbbbbbbbbbbbbbbbbebbbbbbbbbbbbbbbbbbbbeeebeebebeebbbbebbbebbebbbbbbbbbbbbeeeebebeee:    

queryA       468:ISELFDAISYSKGASVLRMLSSFLSEDVFKQGLASYLHTFAYQNTIYLNLWDHLQEAVNNRSIQLPTTVRDIMNRWTLQMGFPVITVDTSTGTLSQEHFL: 567
                :****************************************************************************************************:
4fyq_A_2     404:ISELFDAISYSKGASVLRMLSSFLSEDVFKQGLASYLHTFAYQNTIYLNLWDHLQEAVNNRSIQLPTTVRDIMNRWTLQMGFPVITVDTSTGTLSQEHFL: 503
SecStr          :HHHTSSHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHTTEEE HHHHHHHHHHHHHHTT   SS HHHHHHHHHSS S EEEEEETTTTEEEEEE  :    
ExpBur          :bebbeebbbebbbbbbbbbbbebbeeebbeebbbebbeebeeebbebeebbebbbebbeeeeeebeeebeebbbebbebbbbbbbebebeebebebebbb:    

queryA       568:LDPDSNVTRPSEFNYVWIVPITSIRDGRQQQDYWLIDVRAQNDLFSTSGNEWVLLNLNVTGYYRVNYDEENWRKIQTQLQRDHSAIPVINRAQIINDAFN: 667
                :****************************************************************************************************:
4fyq_A_2     504:LDPDSNVTRPSEFNYVWIVPITSIRDGRQQQDYWLIDVRAQNDLFSTSGNEWVLLNLNVTGYYRVNYDEENWRKIQTQLQRDHSAIPVINRAQIINDAFN: 603
SecStr          :SSTT    S  TTTT   EEE EEETTEE   EEE SSEEE GGG   TT  EEESGGG SS EEEE HHHHHHHHHHHHHHGGGS HHHHHHHHHHHHH:    
ExpBur          :bbeebeeebebebebbbbbbbbbbbeeeebeebebeeeeeeeebbebeeeebbbbbbebbbbbbbbbbeebbebbbebbeeebeebeebbbbbbbbbbbb:    

queryA       668:LASAHKVPVTLALNNTLFLIEERQYMPWEAALSSLSYFKLMFDRSEVYGPMKNYLKKQVTPLFIHFRNNTNNWREIPENLMDQYSEVNAISTACSNGVPE: 767
                :****************************************************************************************************:
4fyq_A_2     604:LASAHKVPVTLALNNTLFLIEERQYMPWEAALSSLSYFKLMFDRSEVYGPMKNYLKKQVTPLFIHFRNNTNNWREIPENLMDQYSEVNAISTACSNGVPE: 703
SecStr          :HHHTTSS HHHHHHTTGGGGG   HHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHTTTTTS  SSHHHHHHHHHHHHHHHHTT HH:    
ExpBur          :bbebeebebebbbebbebbeebeebbbbebbeebbeebebbbbeeebbebbeebbeebbeebbebbeeebeebeeebeebbebbbbebbbebbbebebee:    

queryA       768:CEEMVSGLFKQWMENPNNNPIHPNLRSTVYCNAIAQGGEEEWDFAWEQFRNATLVNEADKLRAALACSKELWILNRYLSYTLNPDLIRKQDATSTIISIT: 867
                :****************************************************************************************************:
4fyq_A_2     704:CEEMVSGLFKQWMENPNNNPIHPNLRSTVYCNAIAQGGEEEWDFAWEQFRNATLVNEADKLRAALACSKELWILNRYLSYTLNPDLIRKQDATSTIISIT: 803
SecStr          :HHHHHHHHHHHHHHSTTS  S GGGHHHHHHHHHHHS HHHHHHHHHHHHT S HHHHHHHHHHGGG   HHHHHHHHHHHT TTTS GGGHHHHHHHHH:    
ExpBur          :bbebbeebbeebbeeeeeeebebbbbebbbebbbbeeeeeebebbbeebeeeebebbbbbbbebbbbbeeeebbeebbeebeeeeebeebbbeebbbebb:    

queryA       868:NNVIGQGLVWDFVQSNWKKLFNDYGGGSFSFSNLIQAVTRRFSTEYELQQLEQFKKDNEETGFGSGTRALEQALEKTKANIKWVKENKEVVLQWFTENSK: 967
                :***********************        *********************************************************************:
4fyq_A_2     804:NNVIGQGLVWDFVQSNWKKLFNDXXXXXXXXSNLIQAVTRRFSTEYELQQLEQFKKDNEETGFGSGTRALEQALEKTKANIKWVKENKEVVLQWFTENSK: 903
SecStr          :HSTTHHHHHHHHHHHHHHHHHH -------- HHHHHHHTT  SHHHHHHHHHHHHHHTTT  GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH  :    
ExpBur          :ebeebbebbbebbeeebeeeeee--------eebbebbbebbbeeebbebbeebeeebeeeebeebeebbebbbbebebbeebbeebeeebbebbeeebe:    


Input Residue Numbers for Focused Sites

ex) 2,15,123