[pdbjlvh2]Protein Model on 3q7j_A_1_D

Protein Model on 3q7j_A_1_D_1 (TEMPLATE: 3q7j )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(AMPN_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [780 aa]	Tricorn protease-interacting factor F3 :TRF3_THEAC
2	b		D 1 (A)	non-polymer(FBO)	L-phenylalanyl-N6-[(benzyloxy)carbonyl]-N1-hydroxy-L-lysinamide	211Q(H) 213Q 351A 352G 353A 354M 355E 368L(Y) 388H 389E 411E 415S(T) 438N(S) 439D(R) 474A(E) 477Y 478S(G) (identity: 58.8 %/37.6 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:3q7j_A_1 identity=37.6%

queryA       173:DSQ-YEMDSEFEGELADDLAGFYRSEYMEGNVRKVVATTQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSNMLPKGPSTPLPEDPNWNVTEFHT: 271
                :***       * *   * * * *      *       **  ** ***  *** * ** ** * **    **  * *** **       *     * **  :
3q7j_A_1      65:DSQPQKIEISFAGKVSDSLSGIYYAGRENGMI-----TTHFQATDARRMFPCVDHPAYKAVFAITVVIDKDYDAISNMPPK-----RIEVSERKVVEFQD: 154
SecStr          : SSSEEEEEEEEEE  SSSSEEEEESSSS EE-----EEE TTT GGGTS B   TTS EEEEEEEEE TT EEEESS EE-----EEEESSSEEEEE  :    
ExpBur          :eeeebebebbbbbebeeeeebbbbbbeeebbb-----bbbbebbbbbebbbbbbebeebbbbbbbbbbbeebebbbbbeee-----eeeeeeebebebee:    
Contact         :                                       b b                                                          

queryA       272:TPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGDYALNVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWGLVTYRENSLLFDP: 371
                :** ******      * *         **               * *        *       ** ***   *  * * ********  * **     * :
3q7j_A_1     155:TPRMSTYLLYVGIGKFRYEYEKYRDIDLI-----LASLKDIRSKYPLDMARKSVEFYENYFGIPYALPKMHLISVPEFGAGAMENWGAITFRE--IYMDI: 247
SecStr          :  EE GGG  EEEE  EEEEEEETTEEEE-----EEESS    SHHHHHHHHHHHHHHHHHSS  SSSEEEEEEETT TT EE  TTEEEEEG--GGTS :    
ExpBur          :beebbbbbbbbbbbebeeeeeebeebebb-----bbbbeebebebbbebbeebbebbbebbebebebebbbbbbbbebeeebbbbbbbbbbee--eebeb:    
Contact         :                                                                               bbbbb            b   

queryA       372:LSSSSSNKER-VVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTWNLKDLMVLNDVYRVMAVDALASSHPLSTPASEINTPAQISE: 470
                :   *     *   ****** ****** ***  ********* **    *   *   * *                 * *   **          *  ** :
3q7j_A_1     248:AENSAVTVKRNSATVIAHEIAHQWFGDLVTMKWWNDLWLNESFATFMSYKTMDTLFPEWSFWGDFFVSRTSGALRSDSLKNTHPIEV---DVRDPDEISQ: 344
SecStr          : SSS TTHHHHHHHHHHHHHHHTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHH GGG HHHHHHHHTHHHHHHHTTSSS   S  ---  SSS  TTT:    
ExpBur          :beeeebeebbebbbbbbbbbbbbbbbbbbbbeebebbbbbbbbbbbbbbbbbeeebeebebbbebbeeebeebbebbbbeebeebeb---ebeebeeeee:    
Contact         :                 bb                     b   b                      bb                               

queryA       471:LFDAISYSKGASVLRMLSSFLSEDVFKQGLASYLHTFAYQNTIYLNLWDHLQEAVNNRSIQLPTTVRDIMNRWTLQMGFPVITVDTSTG--TLSQEHFLL: 568
                : ** *** **** ***         *  *   **      *     **                 *   *  *    * ***         *  *  ***:
3q7j_A_1     345:IFDEISYGKGASILRMIEDYAGYEEFRKGISKYLNDHKFGNAEGSDLWTAIEDVSGK-------PVKRVMEYWIKNPGYPVIKLKRNGRKITMYQTRFLL: 437
SecStr          :T STTTTHHHHHHHHHHHHHH HHHHHHHHHHHHHHTTTEEE HHHHHHHHHHHH S------- HHHHHHHHHHSSS EEEEEEEETTEEEEEEEEE S:    
ExpBur          :beeebbbbbbbbbbbbbbbbbbeeebeebbeebbeeeeebbbebeebbebbeeebee-------ebeebbeebbeeebbbbbbbeeeeeebbbebbbbbb:    
Contact         :   b  bb                                                                                            

queryA       569:DPDSNVTRPSEFNYVWIVPI-TSIRDGRQQQDYWLIDVRAQNDLFSTSGNEWVLLNLNVTGYYRVNYDEENWRKIQTQLQRDHSAIPVINRAQIINDAFN: 667
                :          *    * **      **       *    *     *         *    * *** **            ** *      *     * * :
3q7j_A_1     438:N--------GEEEGRWPVPVNIKKKDGVER---ILLEDEA-----SIEADGLIKINADSAGFYRVLYDDATFSDVMGHY-RDLSP---LDRIGLVDDLFA: 517
SecStr          :S-------- EEE    EEEEEEESSSEEE---EEESS E-----EEE TTEEEESGGG SSSEEE  HHHHHHHHHTT-TT  H---HHHHHHHHHHHH:    
ExpBur          :e--------eeeebebbbbbbbebeeeeee---eebeeee-----ebebeebbbbbbebbbbbbbbbeeebbeebbebe-eebee---bbbbbbbbbbbb:    

queryA       668:-LASAHKVPVT: 677
                : * * *  * *:
3q7j_A_1     518:FLLSGHIDPET: 528
SecStr          :HHHHSSS HHH:    
ExpBur          :bbbbeebebeb:

Protein Model on 3q7j_A_1_D_1 (TEMPLATE: 3q7j )

Input Residue Numbers for Focused Sites