Protein Model on 1z5h_B_4_A_1 (TEMPLATE: 1z5h )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:3] [assembly_id:4]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(AMPN_HUMAN) B 4 (B) polymer(polypeptide(L)) [780 aa] Tricorn protease interacting factor F3 :TRF3_THEAC
2 b A 1 (A) polymer(polypeptide(L)) [780 aa] Tricorn protease interacting factor F3 :TRF3_THEAC 241K 244T(D) 250L(P) 251P 252K 258L(R) 259P(I) 260E 261D(V) 262P(S) 265N(K) 270H(Q) 289Y 291E(Y) 293Q(K) 296N(D) (identity: 31.2 %/37.1 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:1z5h_B_4 identity=37.1%
queryA       173:DSQ-YEMDSEFEGELADDLAGFYRSEYMEGNVRKVVATTQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSNMLPKGPSTPLPEDPNWNVTEFHT: 271
                :***       * *   * * * *      *       **   * ***  *** * ** ** * **    **  * *** **       *     * **  :
1z5h_B_4      65:DSQPQKIEISFAGKVSDSLSGIYYAGRENGMI-----TTHFEATDARRMFPCVDHPAYKAVFAITVVIDKDYDAISNMPPK-----RIEVSERKVVEFQD: 154
SecStr          : SS EEEEEEEEEE BSSSSEEEEESSTT EE-----EEE TTT GGGTS B   TTS BEEEEEEEE TT EEEESS EE-----EEEESSSEEEEE  :    
ExpBur          :eeeebebebbbbbebeeeeebbbbbeeeebbb-----bbbbbbbebbebbbbbbebeebbbbbbbbbbeeebebbbbbbee-----eeeeeeebebebee:    
Contact         :                                                                     b  b     bbb     bbbbb  b    b 

queryA       272:TPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGDYALNVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWGLVTYRENSLLFDP: 371
                :** ******      * *         **               * *        *       ** ***   *  * * ********  * **     * :
1z5h_B_4     155:TPRMSTYLLYVGIGKFRYEYEKYRDIDLI-----LASLKDIRSKYPLDMARKSVEFYENYFGIPYALPKMHLISVPEFGAGAMENWGAITFRE--IYMDI: 247
SecStr          :  SB GGG  EEEE  EEEEEEETTEEEE-----EEESS  S  HHHHHHHHHHHHHHHHHS   SSSEEEEEEETT TTSEE  TTEEEEEH--HHH  :    
ExpBur          :beebbbbbbbbbbbebeeeeeebeebebb-----bbbbeebeeebbbebbeebbebbbebbebebebebbbbbbbbebeebbbbbbbbbbbee--eebeb:    
Contact         :                 b b b  b                                                                           

queryA       372:LSSSSSNKER-VVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTWNLKDLMVLNDVYRVMAVDALASSHPLSTPASEINTPAQISE: 470
                :   *     *    ***** ****** ***  ********* **    *   *   * *                 * *   **          *  ** :
1z5h_B_4     248:AENSAVTVKRNSANVIAHEIAHQWFGDLVTMKWWNDLWLNESFATFMSYKTMDTLFPEWSFWGDFFVSRTSGALRSDSLKNTHPIEV---DVRDPDEISQ: 344
SecStr          : TTS HHHHHHHHHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHH TTS HHHHHHHHTHHHHHHHTTSSS   S  ---  SSS TTSS:    
ExpBur          :beeeeeeeebebbbbbbbbbbbbbbbbbbbbeebebbbbbbbbbbbbbbbbbeeeeeebebbbebbeeebbebbebbbbeebeebeb---ebeeeebeee:    

queryA       471:LFDAISYSKGASVLRMLSSFLSEDVFKQGLASYLHTFAYQNTIYLNLWDHLQEAVNNRSIQLPTTVRDIMNRWTLQMGFPVITVDTSTG--TLSQEHFLL: 568
                : ** *** **** ***         *  *   **      *     **                 *   *  *    * ***         *  *  ***:
1z5h_B_4     345:IFDEISYGKGASILRMIEDYAGYEEFRKGISKYLNDHKFGNAEGSDLWTAIEDVSGK-------PVKRVMEYWIKNPGYPVIKLKRNGRKITMYQTRFLL: 437
SecStr          :S HHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHTTTEEE HHHHHHHHHHHH S------- HHHHHHHHHHS S EEEE   STTEEEEEEEEEET:    
ExpBur          :beeebbebbbbbbbbbbbbbbeeeebeebbbebbeeeeeebbebeebbebbeeebee-------ebeebbeebbeeebbbbbbbeeeeeebbbebbbbbb:    

queryA       569:DPDSNVTRPSEFNYVWIVPI-TSIRDGRQQQDYWLIDVRAQNDLFSTSGNEWVLLNLNVTGYYRVNYDEENWRKIQTQLQRDHSAIPVINRAQIINDAFN: 667
                :          *    * **      **       *    *     *         *    * *** **            ** *      *     * * :
1z5h_B_4     438:N--------GEEEGRWPVPVNIKKKDGVER---ILLEDEA-----SIEADGLIKINADSAGFYRVLYDDATFSDVMGHY-RDLSP---LDRIGLVDDLFA: 517
SecStr          :T--------EEEE    EEEEEEESS EEE---EEESS E-----EEE TTEEEESGGG SSSEEE  HHHHHHHGGGG-GG  H---HHHHHHHHHHHH:    
ExpBur          :e--------eeeebebbbbbbbebeeeeee---eebeeee-----ebebeebbbbbbebbbbbbbbbeeebbeebbeee-eebee---bbbbbbbbbbbb:    

queryA       668:-LASAHKVPVT: 677
                : * * *  * *:
1z5h_B_4     518:FLLSGHIDPET: 528
SecStr          :HHHHTSS HHH:    
ExpBur          :bbbbeebebeb:    


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