Protein Model on 1g88_A_1_C_1 (TEMPLATE: 1g88 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(SMAD3_HUMAN) A 1 (A) polymer(polypeptide(L)) [221 aa] SMAD4 :SMAD4_HUMAN
2 b C 1 (C) polymer(polypeptide(L)) [236 aa] SMAD4 :SMAD4_HUMAN 241N(D) 246E 247T 249H(K) 362A(G) 363V 364Y(D) 367T(R) 397E 399H 401N(H) 404L 405Q 407L 408D 411L 412T(H) (identity: 58.8 %/48.9 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:1g88_A_1 identity=48.9%
queryA       229:PAFWCSISYYELNQRVGETFH--ASQPSMTVDGFTDPSNSERFCLGLLSNVNRNAAVELTRRHIGRGVRLYYIG-GEVFAECLSDSAIFVQSPNCNQRYG: 325
                :*  **** * *    *****    * *  ****  ***   ***** **** *  * *  * *** ** *   * * *   **** * ****       *:
1g88_A_1      36:PEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNVHRTEAIERARLHIGKGVQLECKGEGDVWVRCLSDHAVFVQSYYLDREAG: 135
SecStr          : SEEEEEEEEETTEE S  EEEETT SEEEEES      SSEEE SS   TT  HHHHHHHTT TT EEEEEETTTEEEEEE SSS EEEE HHHHHHTT:    
ExpBur          :beebbbbbbbbeeeebeeebebeeebeebbbbeeeeeeeeeebbbeebebeeeeeebeebbeebeebbebbbeeebbbebebebeebbbbbbebbbeeee:    
Contact         :            b    bb b                                                                               

queryA       326:WHPA-TVCKIPPGCNLKIFNNQEFAALLAQSVNQGFE----------------------------------AVYQLTRMCTIRMSFVKGWGAEYRRQTVT: 390
                :  *   * ** *    * *          *                                          *  * * *  *********  *  *   :
1g88_A_1     136:RAPGDAVHKIYPSAYIKVFDLRQCHRQMQQQAATAQAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXAAGIGVDDLRRLCILRMSFVKGWGPDYPSQSIK: 235
SecStr          :  TT  EEEE TT EEEEE HHHHHHHHHHHHHHHHHTT  --------------------------     HHHHGGGGEEEEEES   STTSS SSGG:    
ExpBur          :beeeebbbbbeeebebebbbbebbbeebeeebeebeeeeee--------------------------eeeeeeeebeebbbbbbbbbebbbeeeebeebe:    
Contact         :                                                                       bbb  b                       

queryA       391:STPCWIELHLNGPLQWLDKVLTQM: 414
                : ****** **   ** ** **  *:
1g88_A_1     236:ETPCWIEIHLHRALQLLDEVLHTM: 259
SecStr          :GSSSEEEEEEHHHHHHHHHHTTTS:    
ExpBur          :ebbbbbbbebebbeebbeebeeeb:    
Contact         :      b b b  bb bb  bb                                                                              


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