Protein Model on 1dd1_C_1_L_1 (TEMPLATE: 1dd1 )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1] [assembly_id:2]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(SMAD3_HUMAN) C 1 (C) polymer(polypeptide(L)) [241 aa] SMAD4 :SMAD4_HUMAN
2 b L 1 (C) non-polymer(SO4) SULFATE ION 378K 385R(P) 386R (identity: 66.7 %/50.8 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:1dd1_C_1 identity=50.8%
queryA       229:PAFWCSISYYELNQRVGETFH--ASQPSMTVDGFTDPSNSERFCLGLLSNVNRNAAVELTRRHIGRGVRLYYIG-GEVFAECLSDSAIFVQSPNCNQRYG: 325
                :*  **** * *    *****    * *  ****  ***   ***** **** *  * *  * *** ** *   * * *   **** * ****       *:
1dd1_C_1      36:PEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNVHRTEAIERARLHIGKGVQLECKGEGDVWVRCLSDHAVFVQSYYLDREAG: 135
SecStr          : SEEEEEEEEETTEE S  EEEETT  EEEEESS     SSEEE SS   TT  HHHHHHHHTTTT EEEEEETTTEEEEEE SSS EEEE HHHHHHHT:    
ExpBur          :beebbbbbbbbeeeebeeebebeeeeeebbbbeeeeeeeeeebbbeebebeeeeeebeebbeebeebbebbbeeebebebebebeebbbbbbebbbeeee:    

queryA       326:WHPA-TVCKIPPGCNLKIFNNQE-----------------------------------FAALLAQSVNQGFEAVYQLTRMCTIRMSFVKGWGAEYRRQTV: 389
                :  *   * ** *    * *                                        *     *   *   *  * * *  *********  * **  :
1dd1_C_1     136:RAPGDAVHKIYPSAYIKVFDLRQCHRQMQQQAATAQAAAAAQAAAVAGNXXXXXXXXXXAPAISLSAAAGI-GVDDLRRLCILRMSFVKGWGPDYPRQSI: 234
SecStr          :  TT  EEEE TT EEEEE HHHHHHHHHHHHHHHHHHHHHHHHHHT  ----------  S EE   TTT-THHHHHHTTEEEEEES   STTSS  SG:    
ExpBur          :eeeeebbbbbeeebebebbbbebbbeebeeebeeeeeebeeebeeeeee----------eeeeeeeeeeee-eeeebeebbbbebbbbebbbeeeebeeb:    
Contact         :                                                                                        b      bb   

queryA       390:TSTPCWIELHLNGPLQWLDKVLTQM: 414
                :  ****** **   ** ** **  *:
1dd1_C_1     235:KETPCWIEIHLHRALQLLDEVLHTM: 259
SecStr          :GGSSSEEEEEEHHHHHHHHHHHHTS:    
ExpBur          :eebbbbbbbebebbebbbeebeeee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123