[pdbjlvh2]Protein Model on 6ujb_A_1_B

Protein Model on 6ujb_A_1_B_1 (TEMPLATE: 6ujb )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(ITAL_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [593 aa]	Integrin alpha-V :ITAV_HUMAN
2	b		B 1 (B)	polymer(polypeptide(L)) [359 aa]	Integrin beta-8 :ITB8_HUMAN	403Y 406Y 426R 428Q(R) 429H(T) 456I(M) 457G(A) 459Y 462G(F) 484L 486Y(M) 488E(R) 490R(E) 516Y(F) 520R 545L(Y) 583R(Y) (identity: 35.3 %/32.4 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:6ujb_A_1 identity=32.4%

queryA       403:YLGYTVTWLP-SRQKTSLLASGAPRY-QHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGE------QRGGRV: 494
                :**** *              ** **     * *        *   *      * *   ***      *   *       ******         *  * *:
6ujb_A_1     221:YLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYD----GKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYADVF-IGAPLFMDRGSDGKLQEVGQV: 315
SecStr          : BTSEEEEE SSSSSS EEEEEETTHHHHT EEEEE ----TTT  EEEEEE SSTTS TTSSEEEE SSSSSS EEE-EEETT EEE TTS EEE  EE:    
ExpBur          :ebbebbbbbebeeeeebbbbbbbbebeeeebbbbbbb----beebeeeeebebebeebebbebbbbbbbbebeebbbb-bbbbebeeeeeeeeeebbbbb:    
Contact         :b  b                    b  bb                          bb b  b                     b b b  bbbb b    

queryA       495:FIYQRRQLGFEEVSELQGDPGYPLGRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGIQW--------FGR: 583
                :     *  *      * *       *** **  * *   **  * *  **       * *******  **   ***  **       **        ** :
6ujb_A_1     316:SVSLQRASGDFQTTKLNGFEVF--ARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEG-------QWAARSMPPSFGY: 406
SecStr          :EEEEE TTS EEEEEEE SSTT--S TTSEEEEEESTT SSS EEEEEETT SGGG  EEEEE   TTS  SS SEEEE -------    SSS   TTS:    
ExpBur          :bbbbbeeeeeeeeeebebeeee--bebbbbbbebbbbbeeeeebbbbbbbebeeeeebbbbbbbbeeebbeeeeebebeb-------ebeeeeeebbbbe:    
Contact         :                     b   b                        b                                          b     b

queryA       584:SIHGVKDLEGDGLADVAVGA--ESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQI--KSLIPQFQGRLVANLTYTLQLDG: 679
                :*  *  *    *  *  ***      *    ***          *         **           *   *     *   *        *    * ** :
6ujb_A_1     407:SMKGATDIDKNGYPDLIVGAFGVDRAILYRARPVITVNAGLEVYPSILNQDNKTCSLPGTALKVSCFNVRFCLKADGKGVLPR-----KLNFQVELLLDK: 501
SecStr          :SEEEEE SS SSS EEEEEEGGGTEEEEEEE  EEEEEEEEEEE SEE TT EEEE SSS  EEEEEEEEEEEEEE SSS  S-----EEEEEEEEEES :    
ExpBur          :bbebebebbebebbbbbbbbbbbbebbbbbbbbbbebebbbeeeeeeeeeeeeeeeeeeeeeeebebbbebbbebebebebee-----ebbbbbebebbe:    
Contact         :                    b                                                                               

queryA       680:HRTR---RRGLFPGGR---HELRRNIAVTTSMSCTDFSFHF--PVCVQDLISPINVSLNFSL: 733
                :       ** **   *   *     *     * *              *   **       *:
6ujb_A_1     502:LKQKGAIRRALFLYSRSPSHSKNMTISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRL: 563
SecStr          : S TT    EEETTTTBSEEEEEEEEETTS  EEEEEEEEE  TTS S SS EEEEEEEEEE:    
ExpBur          :eeeeeeebeebbeeeebeeeeeebebebeeeeeeeeeebbeeeeeeeeeeeeebebebebeb:

Protein Model on 6ujb_A_1_B_1 (TEMPLATE: 6ujb )

Input Residue Numbers for Focused Sites