Protein Model on 6om2_C_1_D_1 (TEMPLATE: 6om2 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(ITAL_HUMAN) C 1 (C) polymer(polypeptide(L)) [596 aa] Integrin alpha-V :ITAV_HUMAN
2 b D 1 (D) polymer(polypeptide(L)) [330 aa] Integrin beta-8 :ITB8_HUMAN 403Y 406Y 426R 428Q(R) 429H(T) 455Q 456I(M) 457G(A) 459Y 462G(F) 484L 486Y(M) 490R(E) 516Y(F) 520R 545L(Y) 583R(Y) (identity: 41.2 %/32.4 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6om2_C_1 identity=32.4%
queryA       403:YLGYTVTWLP-SRQKTSLLASGAPRY-QHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGE------QRGGRV: 494
                :**** *              ** **     * *        *   *      * *   ***      *   *       ******         *  * *:
6om2_C_1     221:YLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYD----GKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYADVF-IGAPLFMDRGSDGKLQEVGQV: 315
SecStr          : BTSEEEEE SSSSSS EEEEEETTTTTTT EEEEE ----TTT  EEEEEE SSTTS TTSSEEEE  SSSSS EEE-EEETT B   TTS   B  EE:    
ExpBur          :ebbbbbbebebeeeeebbbbbbbbebeeeebbbbbbb----beebeeeeebebeeeebebbbbbbbbbbbeeeebbbb-bbbbebeeebeeeeeebbbbb:    
Contact         :b  b                    b  bb                         bbb b  b                     b b   bbbbb b    

queryA       495:FIYQRRQLGFEEVSELQGDPGYPLGRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGIQW---------FG: 582
                :     *  *      * *       *** **  * *   **  * *  **       * *******  **   ***  **       **         **:
6om2_C_1     316:SVSLQRASGDFQTTKLNGFEVF--ARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEG-------QWAARSGCPPSFG: 406
SecStr          :EEEEE SSSSEEEEEEE SSTT--  TTS EEEEE TT SSS EEEEEETT SGGG  EEEEE EETTEE SS SEEEE -------     SSS   TT:    
ExpBur          :bbbbbeeeeebeeeebebeeee--bebbbbbbebbbbbeeeeebbbbbbbbbbeeebbbbbbbbbeeebbbeebbbebeb-------ebeeeeeeebbbb:    
Contact         :                     b   b                        b                                           bb    

queryA       583:RSIHGVKDLEGDGLADVAVGA--ESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQI--KSLIPQFQGRLVANLTYTLQLD: 678
                : *  *  *    *  *  ***      *    ***          *         **           *   *     *   *        *    * **:
6om2_C_1     407:YSMKGATDIDKNGYPDLIVGAFGVDRAILYRARPVITVNAGLEVYPSILNQDNKTCSLPGTALKVSCFNVRFCLKADGKGVLPR-----KLNFQVELLLD: 501
SecStr          :SEEEEEE TTSSSS EEEEEEGGGTEEEEE B  EEEEEEEEEEE SEE TT   SB TTSS B  EEEEEEEEEEEESSS  S-----EEEEEEEEEES:    
ExpBur          :ebbebebebbebebbbbbbbbbbbbebbbbbbbbbbebeeebebeeeebebeeeebebeeeeeebbbbebebbbebebeeebee-----ebebebebebb:    
Contact         :b                    b                                                                              

queryA       679:GHRTR---RRGLFPGGR---HELRRNIAVTTSMSCTDFSFHF--PVCVQDLISPINVSLNFSL: 733
                :        ** **   *   *     *     * *              *   **       *:
6om2_C_1     502:KLKQKGAIRRALFLYSRSPSHSKNMTISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRL: 564
SecStr          :TT  TTS   EEETTT SSEEEEEEEEETTS  EEEEEEEEE  GGG    SS EEEEEEEEE:    
ExpBur          :eebeeeeebbbbbbeeeeeeeeeebebeeeeeeebeebebbbeeeeebeeeeeebbbbbebeb:    


Input Residue Numbers for Focused Sites

ex) 2,15,123