Protein Model on 6om1_E_1_X_1 (TEMPLATE: 6om1 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:3]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(ITAL_HUMAN) E 1 (E) polymer(polypeptide(L)) [593 aa] Integrin alpha-V :ITAV_HUMAN
2 b X 1 (X) branched(oligosaccharide) alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 623S(E) 625S(Y) 633E(N) 635E(T) 647G(C) 648V(F) (identity: 0.0 %/31.7 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6om1_E_1 identity=31.7%
queryA       403:YLGYTVTWLP-SRQKTSLLASGAPRY-QHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGE------QRGGRV: 494
                :**** *              ** **     * *        *   *      * *   ***      *   *       ******         *  * *:
6om1_E_1     221:YLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYD----GKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYADVF-IGAPLFMDRGSDGKLQEVGQV: 315
SecStr          : BTSEEEEE  SSSSS EEEEEETTHHHHT EEEEE ----TTT  EEEEEE SSTTS TTSEEEEE SSSSSS EEE-EE TT EEE TTS EEE BEE:    
ExpBur          :ebbebbbebebeeeeebbbbbbbbebeeeebbbbbbb----beebeeeeebebeeeebbbbebbbbbbbbeeeebbbb-bbbbebeeeeeeeeeebbbbb:    

queryA       495:FIYQRRQLGFEEVSELQGDPGYPLGRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGIQW---------FG: 582
                :     *  *      * *       *** **  * *   **  * *  **       * *******  **   ***  **       **         **:
6om1_E_1     316:SVSLQRASGDFQTTKLNGFEVF--ARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEG-------QWAARSGCPPSFG: 406
SecStr          :EEEEE TTSSEEEEEEE SSTT--S BTSEEEEEESTT SSS EEEEEETT SGGG  EEEEEEEETTEE SS SEEEE -------     SSS   TT:    
ExpBur          :bbbbbeeeeebeeeebebeeee--bebbbbbbebbbbbeeeeebbbbbbbbbeeeeebbbbbbbbeeebbeeebbbebeb-------ebeeeeeeebbbb:    

queryA       583:RSIHGVKDLEGDGLADVAVGA--ESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQIKSLIPQFQGRLVANLTYTLQLDGH: 680
                : *  *  *    *  *  ***      *    ***          *         **           *   *           * *   *     *   :
6om1_E_1     407:YSMKGATDIDKNGYPDLIVGAFGVDRAILYRARPVITVNAGLEVYPSILNQDNKTCSLPGTXXKVSCFNVRFCLKADG-----KGVLPRKLNFQVELLLD: 501
SecStr          :SEEEEEE TT SSS EEEEEEGGGTEEEEEEE  EEEEEEEEEEESSB  TTT  B  TT -- B EEEEEEEEEEEE-----SSS  SEEEEEEEEEE :    
ExpBur          :ebbebebebbebebbbbbbbbbbbbbbbbbbbbbbbebeeebebeeeebebeeeebeeeee--ebbbbebebbbebeb-----eeebeeebebebbbebb:    
Contact         :                                          b b       b b           bb                                

queryA       681:RTR-----RRGLFPGGR---HELRRNIAVTTSMSCTDFSFHF--PVCVQDLISPINVSLNFSL: 733
                :        ** **   *   *     *     * *              *   **       *:
6om1_E_1     502:KLKXXXAIRRALFLYSRSPSHSKNMTISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRL: 564
SecStr          :   ---    EEETTT SSEEEEEEEEETTS  EEEEEEEEE  GGG    SS EEEEEEEEE:    
ExpBur          :eee---eeebbbbbeeeeeebeeebebebeeeeebeebebbbeeeeebebeeeebbbbbebeb:    


Input Residue Numbers for Focused Sites

ex) 2,15,123