[pdbjlvh2]Protein Model on 5ffo_A_1_B

Protein Model on 5ffo_A_1_B_1 (TEMPLATE: 5ffo )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(ITAL_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [589 aa]	Integrin alpha-V :ITAV_HUMAN
2	b		B 1 (B)	polymer(polypeptide(L)) [242 aa]	Integrin beta-6 :ITB6_HUMAN	403Y 406Y 426R 428Q(R) 429H(T) 456I(M) 457G(A) 459Y 462G(F) 483P 484L 486Y(M) 490R(E) 516Y(F) 520R 545L(Y) 583R(Y) (identity: 41.2 %/32.4 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5ffo_A_1 identity=32.4%

queryA       403:YLGYTVTWLP-SRQKTSLLASGAPRY-QHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGE------QRGGRV: 494
                :**** *              ** **     * *        *   *      * *   ***      *   *       ******         *  * *:
5ffo_A_1     221:YLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYD----GKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYADVF-IGAPLFMDRGSDGKLQEVGQV: 315
SecStr          : BTSEEEEE  SSSSS EEEEEETTHHHHT EEEEE ----TTT  EEEEEE SSTTS TTSEEEEE  SSSS  EEE-EEETT EEE TTS EEE  EE:    
ExpBur          :ebbebbbbbebeeeeeebbbbbbbebeeeebbbbbbb----beebeeeeebebeeeebebbbbbbbbbbbeeeebbbb-bbbbebeeebeeeeeebbbbb:    
Contact         :b  b                    b  bb                          bb b  b                    bb b       b b    

queryA       495:FIYQRRQLGFEEVSELQGDPGYPLGRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGIQW---------FG: 582
                :     *  *      * *       *** **  * *   **  * *  **       * *******  **   ***  **       **         **:
5ffo_A_1     316:SVSLQRASGDFQTTKLNGFEVF--ARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEG-------QWAARSGCPPSFG: 406
SecStr          :EEEEE TTS EEEEEEE SSTT--S TTSEEEEEESTT SSS EEEEEETT TGGG  EEEEE EETTEE SS SEEEE -------     SSS   EE:    
ExpBur          :bbbbbeeeeeeeeeebebeeee--bebbbbbbbbbbbbeeeeebbbbbbbbbbeeebbbbbbbbbeeebbbeeebbebeb-------ebeeeeeeebbbb:    
Contact         :                     b   b                        b                                          bbb    

queryA       583:RSIHGVKDLEGDGLADVAVGA--ESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQI--KSLIPQFQGRLVANLTYTLQLD: 678
                : *  *  *    *  *  ***      *    ***          *         **           *   *     *   *        *    * **:
5ffo_A_1     407:YSMKGATDIDKNGYPDLIVGAFGVDRAILYRARPVITVNAGLEVYPSILNQDNKTCSLPXXXXKVSCFNVRFCLKADGKGVLPR-----KLNFQVELLLD: 501
SecStr          :EEEEEEE TTSSSS EEEEEEGGGTEEEEE B  EEEEEEEEEEE SB  SS B S   ----  BEEEEEEEEEEEESSS  S-----EEEEEEEEEES:    
ExpBur          :ebbebeeebbebebbbbbbbbbbbbbbbbbbbbbbbebeeebebeeeebeeeeeebeee----eebbbebebbbebebeeebee-----ebebebebebb:    
Contact         :b                    b                                                                              

queryA       679:GHRTR---RRGLFPGGR---HELRRNIAVTTSMSCTDFSFHF--PVCVQDLISPINVSLNFSL: 733
                :        ** **   *   *     *     * *              *   **       *:
5ffo_A_1     502:KLKQKGAIRRALFLYSRSPSHSKNMTISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRL: 564
SecStr          :TTS TTS   EEETTT SSEEEEEEEEESSS  EEEEEEEEE  GGG S  SS EEEEEEEEE:    
ExpBur          :eebeeeeeebbbbbeeeeeeeeeebebebeeeeeeeeeebbbeeeeebeeeeeebbbbbbbeb:

Protein Model on 5ffo_A_1_B_1 (TEMPLATE: 5ffo )

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