Protein Model on 5es4_C_1_N_1
(TEMPLATE: 
5es4
)Protein Model on 5es4_C_1_N_1
(TEMPLATE: 5es4
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(ITAL_HUMAN) | C 1 (C) | polymer(polypeptide(L)) [884 aa] | Integrin alpha-X :ITAX_HUMAN | |
| 2 | b | N 1 (N) | branched(oligosaccharide) | alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 65N 66S(Q) 92S(N) (identity: 33.3 %/37.5 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5es4_C_1 identity=37.5% |
queryA 26:YNLDVRGARSFSPPRAGRHFGYRVLQVGNG-VIVGAPGE---GNSTGSLYQCQSGTGHCLPVTLR-GSNYTSKYLGMTLATDPTDGSILACDPGLSRTCD: 120
: *** * ** ** * * * * **** * ** **** ** * * * ** ** *** * * :
5es4_C_1 1:FNLDTEELTAFRVDSAG--FGDSVVQYANSWVVVGAPQKITAANQTGGLYQCGYSTGACEPIGLQVPPEAVNMSLGLSLASTTSPSQLLACGPTVHHECG: 98
SecStr : SSS EEEE SSS--TTSEEEEETTTEEEEE TT BTTB B EEEEETTTS EEE TTSBS BTSEEEEETTTTEEEEEEEEEEEE S:
ExpBur :bbbbeeeebebebebeb--bbbbbbbbeeeebbbbbbeeeeeeebbbbbbebbeeeeeeeebeeeebeebeebebbebbbebeeeeebbbbbbebeeebe:
Contact : b b bb b
queryA 121:QNTYLSGLCYLFRQNLQGPMLQGRPGFQECIKGNVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKLSNTSYQFAAVQFSTSYKTEFDFSDYVKRKDPDAL: 220
: * ** *** * :
5es4_C_1 99:RNMYLTGLCFLL----------------------------------------------------------------------------------------: 110
SecStr :S EEEEEEEEEE----------------------------------------------------------------------------------------:
ExpBur :eeebbbbbbbbb----------------------------------------------------------------------------------------:
queryA 221:LKHVKHMLLLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGNIDAAKDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVKILDTFEKL: 320
: :
5es4_C_1 -1:----------------------------------------------------------------------------------------------------: -1
SecStr :----------------------------------------------------------------------------------------------------:
ExpBur :----------------------------------------------------------------------------------------------------:
queryA 321:KDLFTELQKKIYVIEGTSKQDL------------------------------------------------------------------------------: 342
: :
5es4_C_1 111:----------------------GPTQLTQRLPVSRQECPRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX: 188
SecStr :----------------------ETTEEEEEESSS -----------------------------------------------------------:
ExpBur :----------------------beeeeeeebbeeeeeeeee-----------------------------------------------------------:
queryA -1:----------------------------------------------------------------------------------------------------: -1
: :
5es4_C_1 189:XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX: 288
SecStr :----------------------------------------------------------------------------------------------------:
ExpBur :----------------------------------------------------------------------------------------------------:
queryA 343:-------------------------------------TSFNMELSSSGISADLSRGHAVVGAVGAKDWAGGFLDLKADLQDDTFIGNEPLTPEVRAGYLG: 405
: ** * * ** * **** * ** *** * ***:
5es4_C_1 289:XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSFELEMAQEGFSAVFTPDGPVLGAVGSFTWSGGAFLYPPNM-SPTFINMSQENVDMRDSYLG: 387
SecStr :------------------------------------- SSTT TTSEEE TTS EEEESSHHHHTBEEEE TTS- EEE TT SS TTS BT:
ExpBur :-------------------------------------eeeeebebbbbebbbbbeebbbbbbbbbebebbbbbbbeeee-eeeebebeeeeeebeebebb:
queryA 406:YTVTWLPSRQKTSLLASGAPRYQHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGEQRGGRVFI--YQRRQLG: 503
:* * * * ******* * * * * ********* ** **** ** * * ***** * *** * * :
5es4_C_1 388:YS-TELALWKGVQSLVLGAPRYQHTGKAVIFT--QVSRQWRMKAEVTGTQIGSYFGASLCSVDVDSDGSTDLVLIGAPHYYEQTRGGQVSVCPLPRGWRR: 484
SecStr :SE-EEEE SS EEEEEETTGGGTBEEEEEE--EETTEEEEEEEEE SSTT BTSEEEEE SSSSSS EEEEEEEEEEETTEEEEEEEEE SSS :
ExpBur :eb-beebeeeeebbbbbbbbebeebbbbbbbb--beeeebeebbebebeeeebebbbbbbbbebeeeebbebbbbbbbebeeeebbbbbbbbbebebebe:
queryA 504:FEEVSELQGDPGYPLGRFGEAITALTDINGDGLVDVAVGAPLEEQ--GAVYIFNGRHG-GLSPQPSQRIEGTQVLSGIQWFGRSIHGVKDLEGDGLADVA: 600
: * * * * **** * * * * *** * ** *** ** **** * * * ** **** * * * * ** * ** *** * *:
5es4_C_1 485:WWCDAVLYGEQGHPWGRFGAALTVLGDVNGDKLTDVVIGAPGEEENRGAVYLFHGVLGPSISPSHSQRIAGSQLSSRLQYFGQALSGGQDLTQDGLVDLA: 584
SecStr : EEE SSEEEEEETSEEEEEE SSSSSS EEEEEETTHHHHTBEEEEEEEETTTEE SS S EEEHHHH TT SBTSEEEEEE SSSSSS EEE:
ExpBur :bebeeebebeeebeebbbbebbbebeebbbeebbbbbbbbbbbeeeebbbbbbbbeeeeebbeeeeebbbbeeeeeebeebbebbbbebbbbebebbbbb:
queryA 601:VGAESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQIKSLIPQFQGR--LVANLTYTLQLDGHRTRRRGLFPGGRHE-LRR: 697
:*** * * *** * * ***** ** * ** * * * * * ** * * * * *:
5es4_C_1 585:VGARGQVLLLRTRPVLWVGVSMQFIPAEIPRSAFECREQVVSE-QTLVQSNICLYIDKRSKNLLGSRDLQSSVTLDLALDPGRLSPRATFQETKNRSLSR: 683
SecStr :EE SSEEEEEE EE EEEEEEESSSB GGGTS S STT - EEEEEEEEEE S S SSSSS EEEEEEEEESTT SS EETTTSSSEEEE:
ExpBur :bbbeebbbbbbbebbbbbbeeeebeeeebeeebbeeeeeeeee-eeebebebbbebeeeeeebeeebbeebebbbebbbbeeeeeebbebeeeeeeebee:
queryA 698:NIAVTTSMSCTDFSFHFPVCVQDLISPINVSLNFSLWEEEGTPRDQRAQGKDIPPI--LRPSLHSE-----TWEIPFEKNCGEDKKCEANLRVSFSPARS: 790
: * * * ** * ** *** * ** *** * * ******* * * ** *** :
5es4_C_1 684:VRVLGLKAHCENFNLLLPSCVEDSVTPITLRLNFTL------------VGKPLLAFRNLRPMLAADAQRYFTASLPFEKNCGADHICQDNLGISFSFPGL: 771
SecStr :EEEE SS EEEEEEEEE SS S SSS EEEEEEEEE------------ S SSTT EE TTS EEEEEE B SS EEEEEE SS :
ExpBur :eeebbeeeeeeebebbbeeebebeeebbebebebeb------------ebeebeeeebbebbbbeeeeeeeebebbbebeeeeeeeeeeebbbebebeee:
queryA 791:RALRLTAFASLSVELSLSNLEEDAYWVQLDLHFPPGLSFRKVEMLKPHSQIP---VSCEELPEESRLLSRALSCNVSSPIFKAGHSVALQMMFNTLVNSS: 887
: * * * * ** * * *** * * * * * * ** ** * * :
5es4_C_1 772:KSLLVGSNLELNAEVMVWNDGEDSYGTTITFSHPAGLSYRYVAEGQKQGQLRSLHLTCDSAPVGSQ-GTWSTSCRINHLIFRGGAQITFLATFDVSPKAV: 870
SecStr : SEEETTB EEEEEEEEEE SS EES EEEEEEETTEEEE SS SS EEEEEE SSS-SEEEEEEE S EE TT EEEEEEEEEE TT :
ExpBur :eebbbeeeeebebebebebeeebbebbebbbebbeebebeeeeeeeeeeeebebebeeeeeeeeee-eeebbebebbeeebeeeeebebbbbbebeeebe:
queryA 888:WGDSVELHANVTCNNEDSDLLEDNSATTI---IPILYPINILIQDQEDSTLYVSFTPKGPK-IHQVKHMYQV-----RIQPSIHDHNIP---TLEAV---: 972
: ** * *** * * ** * * * * * * * * * *** * * * *** :
5es4_C_1 871:LGDRLLLTANVSSENNT----PRTSKTTFQLELPVKYAVYTVVSSHEQFTKYLNFSESEEKESHVAMHRYQVNNLGQRDLPVSINFWVPVELNQEAVWMD: 966
SecStr : SEEEEEEEEE TT ---- SS EEEEEEEEEEE EEEEE S GGG S EEEEEEEEEEEE SSS EEEEEEEEEEEEETTEESEEE:
ExpBur :beeebebbbebebbbee----eeeeeeeeeeebebebbbbbbbeebeeebeebebeeeeeeeeeebebebebbbebeeebebbbbbbbbbebeeeebbee:
queryA 973:VGVPQPPSEGPITHQWSVQMEPPVPCHYEDLERLPDAAEPCLPGAL-FRCPV---VFRQEILVQVIGTLEL--VGEIEASSMFSLCSSLSISFNSSKHFH:1066
:* * * * * ** * * * *** * * * * * * * * * * * :
5es4_C_1 967:VEVSHP--QNPSLRCSSEKIAPPASDFLAHIQKNP-VLDCSIAGCLRFRCDVPSFSVQEELDFTLKGNLSFGWVRQILQKKV-SVVSVAEITFDTSVYSQ:1062
SecStr :EEEE --SS EEEEEE HHHHHHHS -EE TTTSEEEEEEEEEEEE TT EEEEEEEEEEESSGGGGGT S -EEEEEEEEE TTTEEE:
ExpBur :beeebe--eeeeeeeeeeeeeeeeeeeeeebeeee-ebeeebbbbeebebebeebbebbbbbbbbebebbbbbbeebeeeeb-bbbbbbebebeeeebeb:
queryA 1067:LYGSNA:1072
:* * *:
5es4_C_1 1063:LPGQEA:1068
SecStr : SSTTG:
ExpBur :eeeeee:
|
[assembly_id:2]
[help]