Protein Model on 4nen_A_1_P_1 (TEMPLATE: 4nen )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(ITAL_HUMAN) A 1 (A) polymer(polypeptide(L)) [1063 aa] Integrin alpha-X :ITAX_HUMAN
2 b P 1 (B) non-polymer(MG) MAGNESIUM ION 335E (identity: 100.0 %/37.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:4nen_A_1 identity=37.0%
queryA        26:YNLDVRGARSFSPPRAGRHFGYRVLQVGNG-VIVGAPGE---GNSTGSLYQCQSGTGHCLPVTLR-GSNYTSKYLGMTLATDPTDGSILACDPGLSRTCD: 120
                : ***      *    **  **  * *  *  * ****        ** ****   ** * *  *          **  **        *** *     * :
4nen_A_1       1:FNLDTEELTAFRVDSAG--FGDSVVQYANSWVVVGAPQKITAADQTGGLYQCGYSTGACEPIGLQVPPEAVNMSLGLSLASTTSPSQLLACGPTVHHECG:  98
SecStr          :  B SSS EEEE  STT--TTSEEEEETTTEEEEEEEEEEEETTEEEEEEEEETTT SEEE      TT BS  BTSEEEEETTTTEEEEEEEEEEEEET:    
ExpBur          :bbbbeeeebebebebeb--bbebbbbbbeeebbbbbbeeeeeeebbbbbbebbbeeeebeebeeeebeebeebbbbebbbeeeeeebbbbbbbbbebebe:    

queryA       121:QNTYLSGLCYLFRQNLQGP--MLQGRP-GFQECIKGNVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKLSNTSYQFAAVQFSTSYKTEFDFSDYVKRKDP: 217
                : * ** *** *      **    *  *   ***     * *** *** *     *     *   *       * **   ***    * * *        *:
4nen_A_1      99:RNMYLTGLCFLL-----GPTQLTQRLPVSRQECPRQEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFEEFRRSSNP: 193
SecStr          :TEEEEEEEEEEE----- SSS  EEESSS     B  EEEEEEEE STTS THHHHHHHHHHHHHHTTS TTTEEEEEEEESSSEEEEE HHHHHH S G:    
ExpBur          :ebebbbbbbbbb-----beeeeeeebbeeebebebeebbbbbbbbbbeebeeeebeebbebbebbbeebeeebbbbbbbbbbeeeeebbbbeebeebeeb:    

queryA       218:DALLKHVKHMLLLTNTFGAINYVATEVFREELGARPDATKVLIIITD----GEATDSGNIDAAKD---IIRYIIGIGKHFQTKESQETLHKFASKPASEF: 310
                :  **  *      * *  **  *    *    *** ** * ** ***    *   *        *   **** ** *  **   *   *   ****  * :
4nen_A_1     194:LSLLASVHQLQGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSLDYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEH: 293
SecStr          :GGGGGG     S B HHHHHHHHHTTTSSGGGT  SSSEEEEEEEE S  BS S  HHHHHHHHHHTT EEEEEE GGGTTSHHHHHHHHHHS SSGGGT:    
ExpBur          :eeebeebeeeeeebebbebbeebbeebbeeeebbbeebeebbbbbbbbeeeebeeebeebbeebeeeebebbbbbbeebeeeeebeebbbebbbeebeeb:    

queryA       311:VKILDTFEKLKDLFTELQKKIYVIEGTSKQDLTSFNMELSSSGISADLSRGHAVVGAVGAKDWAGGFLDLKADLQDDTFIGNEPLTPEVRAGYLGYTVTW: 410
                :      *  ***    *  **  ****      **  *    * **       * ****   * **         * ***         *  ****  * :
4nen_A_1     294:IFKVEDFDALKDIQNQLKEKIFAIEGTETTSSSSFELEMAQEGFSAVFTPDGPVLGAVGSFTWSGGAFLYPPNM-DPTFINMSQENVDMRDSYLGYS-TE: 391
SecStr          :EEESS SHHHHHH   B    B GGG   SS B   STT  EEEEEEEETTEEEEEETTHHHHT  EEE  TTS-  EEE   TT GGGTTS TTSS-EE:    
ExpBur          :beebeeeebbeeebeeeeebebbeeeeeeeebeebeebbbbbbebbbbbeebbbbbbbbbebebbbbbbbbeee-eeeebebeeeeeebeebebbeb-be:    
Contact         :                        b                                                                           

queryA       411:LPSRQKTSLLASGAPRYQHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGEQRGGRVFI----YQRRQLGFEE: 506
                :*        *  ******* *    *   *    *       *********  ** **** ** * * *****  *   *** *         *      :
4nen_A_1     392:LALWKGVQSLVLGAPRYQHTGKAVIFT--QVSRQWRMKAEVTGTQIGSYFGASLCSVDVDSDGSTDLVLIGAPHYYEQTRGGQVSVCPLPRGWRRWWCDA: 489
SecStr          :EEEETTEEEEEEEETTGGGT EEEEEE--ESSSSEEEEEEEE  STTS TTSSEEEE SS SSS  EEEEE TT B SSEEE EEEEE   TT      E:    
ExpBur          :bbeeeeebbbbbbbbebeebbbbbbbb--eeeeebeeebebebeeeebebbbbbbbbebeeeebbbbbbbbbbebeeeeebbbbbbbebeeeeeebeeee:    

queryA       507:VSELQGDPGYPLGRFGEAITALTDINGDGLVDVAVGAPLEEQ--GAVYIFNGRHG-GLSPQPSQRIEGTQVLSGIQWFGRSIHGVKDLEGDGLADVAVGA: 603
                :*  * *  * * **** * * * * *** * **  *** **   **** * *  *   **  **** * *  *  * **    *  **  *** * ****:
4nen_A_1     490:V--LYGEQGHPWGRFGAALTVLGDVNGDKLTDVVIGAPGEEENRGAVYLFHGVLGPSISPSHSQRIAGSQLSSRLQYFGQALSGGQDLTQDGLVDLAVGA: 587
SecStr          :E--E   SSEEEEEETSEEEE   SSSSSS  EEEE TTHHHHTBEEEEE EETTTEE SS SEEEEHHHH TT  SBTSSEEEEE  SSSSS EEEEEE:    
ExpBur          :e--bbbeeebeebebbebbbebbebbeeebbbbbbbbbbbeeeebbbbbbbbeeeebbbeeeebbbbbeebeeebeebbebbbbebebbebebebbbbbb:    

queryA       604:ESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQIKSLIPQFQGR--LVANLTYTLQLDGHRTRRRGLFPGGR-HELRRNIA: 700
                :  *   *  ***      * * *****    **           *   **  *        *   *    *  * **  *   *  *       * *   :
4nen_A_1     588:RGQVLLLRTRPVLWVGVSMQFIPAEIPRSAFECREQVVSE-QTLVQSNICLYIDKRSKNLLGSRDLQSSVTLDLALDPGRLSPRATFQETKTRSLSRVRV: 686
SecStr          :TTEEEEEEB  EEEEEEEEEEESSSB TTSS  S     S- EEEEEEEEEEEEES    SS SS  EEEEEEEEESTT SS S EETTTSSSEEEEEEE:    
ExpBur          :eebbbbbbbebbbebebebebeeeebeeebeeeeeeeeee-eeebebebbbebebebeebeebeebebebebebbbbeeeeeebbbbeebeeeebeeeee:    

queryA       701:VTTSMSCTDFSFHFPVCVQDLISPINVSLNFSLWEEEGTPRDQRAQGKDIPPI--LRPSLHSE-----TWEIPFEKNCGEDKKCEANLRVSFSPARSRAL: 793
                :      *  *    * ** *   **   *** *             **       *** *        *   ***           **  ***      *:
4nen_A_1     687:LGLKAHCENFNLLLPSCVEDSVTPITLRLNFTL------------VGKPLLAFRNLRPMLAADAQRYFTASLPFEXXXXXXXXXXDNLGISFSFPGLKSL: 774
SecStr          :E SEEEEEEEEEEE SS S  SS EEEEEEEEE------------EE   STTSS   EE TT    EEEEE B ----------  EEEEEE TT SSE:    
ExpBur          :bbeeeeebebebbbebeeeeeeebbebebbbeb------------ebeeeeeeeebebbbbeeeeeebebebbbe----------bebbbebebeeeeeb:    

queryA       794:RLTAFASLSVELSLSNLEEDAYWVQLDLHFPPGLSFRKVE---MLKPHSQIPVSCEELPEESRLLSRALSCNVSSPIFKAGHSVALQMMFNTLVNSSWGD: 890
                :       *  *    *  ** *        * *** * *               *   *  *       **     **  *        *        **:
4nen_A_1     775:LVGSNLELNAEVMVWNDGEDSYGTTITFSHPAGLSYRYVAXXXXXXXXXXLHLTCDSAPVGSQ-GTWSTSCRINHLIFRGGAQITFLATFDVSPKAVLGD: 873
SecStr          :EETTB EEEEEEEEEE SS BSSEEEEEEEETTEEEE   ----------   EEEEEE SSS-SEEEEEEEE SS B TT EEEEEEEEEE TT   TT:    
ExpBur          :bbeeeeebebebebebeeeebebbbbebebeebbebeeee----------eebeeeeeeeeee-eeebbebebeeeebeeeeeeebebbbebeeebebee:    

queryA       891:SVELHANVTCNNEDSDLLEDNSATTI---IPILYPINILIQDQEDSTLYVSFTPKGPK-IHQVKHMYQV-----RIQPSIHDHNIP---TLEAV---VGV: 975
                :   * ***             * **     *  *         *  * *  *     *  *   * ***     *  *       *     ***   * *:
4nen_A_1     874:RLLLTANVSSESNT----PRTSKTTFQLELPVKYAVYTVVSSHEQFTKYLCFSESEEKESHVAMHRYQVNNLGQRDLPVSINFWVPVELNQEAVWMDVEV: 969
SecStr          :EEEEEE  B SS  ----   SS  EEEEEEEEEEE EEEEE SSS  EEEE TT TT EEEEEEEEEEEE SSS EEEEEEEEEEEEETTEESEEEEEE:    
ExpBur          :ebebbbebebbeee----eeeeeeeeeeebebebbbebbbeebeeebeebebbeeeeeeeeebebbbebbbebebebebbbbbebbbebeeeebbeebeb:    

queryA       976:PQPPSEGPITHQWSVQMEPPVPCHYEDLERLPDAAEPCLPGAL-FRCPV---VFRQEILVQVIGTLEL--VGEIEASSMFSLCSSLSISFNSSKHFHLYG:1069
                :  *    *     *    **           *        * * *** *       *      * *    *  *      *  *   * *  *    * *:
4nen_A_1     970:SHP--QNPSLRCSSEKIAPPASDFLAHIQKNP-VLDCSIAGCLRFRCDVPSFSVQEELDFTLKGNLSFGWVRQILQKKV-SVVSVAEITFDTSVYSQLPG:1065
SecStr          :E S--SSTT  EEEEEE      HHHHHHHS -EESTTTSEEEEEEEEEEEE TT EEEEEEEEEEESGGGGGTT SEE-EEEEEEEEEE TTTEEE TT:    
ExpBur          :ebe--eeeebeeeeeeeeeeeeebeeebeeee-bbeeebbbbbebebebeebbbeebbbbbbebebbbbbbeebeeeeb-ebbbbbebebeeeebebeee:    

queryA      1070:SNA:1072
                :  *:
4nen_A_1    1066:QEA:1068
SecStr          : GG:    
ExpBur          :eee:

Input Residue Numbers for Focused Sites

ex) 2,15,123