Protein Model on 4g1m_A_1_V_1 (TEMPLATE: 4g1m )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(ITAL_HUMAN) A 1 (A) polymer(polypeptide(L)) [929 aa] Integrin alpha-V :ITAV_HUMAN
2 b V 1 (A) non-polymer(NA) SODIUM ION 886S 887S(E) 888W(M) 889G(D) (identity: 25.0 %/29.2 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:4g1m_A_1 identity=29.2%
queryA       340:QDLTSFNMELSSSGISADLSRGHAVV-GAVGAKDWAGGFL-----DLKADLQDDTF---IGNEPLTPEVRA----GYLGYTVTWLP-SRQKTSLLASGAP: 425
                :**           * * *      *  *  *   * *                        *   *    *     **** *              ** *:
4g1m_A_1     145:QDIDADGQGFCQGGFSIDFTKADRVLLGGPGSFYWQGQLISDQVAEIVSKYDPNVYSIKYNNQLATRTAQAIFDDSYLGYSVAVGDFNGDGIDDFVSGVP: 244
SecStr          :SS STTTTTT  TTSEEEE TTSEEEEEETTHHHHTBEEEEEEHHHHHHT  TT SS   TT EE     GGG S  BTSEEEEE  SSSS  EEEEEET:    
ExpBur          :eebebebbbebebbebbebbeeebbbbbbbbbbeebbbbbbbebebbeeeeeeeeeeeebeeebebeeeeeeeeebebbbbbbbbebeeeeebbbbbbbb:    

queryA       426:RY-QHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGE------QRGGRVFIYQRRQLGFEEVSELQGDPGYPL: 518
                :*     * *        *   *      * *   ***      *   *       ******         *  * *     *  *      * *      :
4g1m_A_1     245:RAARTLGMVYIYD----GKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYADVF-IGAPLFMDRGSDGKLQEVGQVSVSLQRASGDFQTTKLNGFEVF--: 337
SecStr          :THHHHT EEEEE ----TTT  EEEEEE SSTTS TTSEEEEE  SSSS  EEE-EEETT EEE SSS EEE  EEEEEEE TTS EEEEEEE SSTT--:    
ExpBur          :ebeeebbbbbbbb----beebeeeeebebebeebebbbbbbbbbbbeeeebbbb-bbbbebebebeeeeeebbbbbbbbbbeeebebeeeebebeeee--:    

queryA       519:GRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGIQW--------FGRSIHGVKDLEGDGLADVAVGA--ES: 605
                : *** **  * *   **  * *  **       * *******  **   ***  **       **        ** *  *  *    *  *  ***    :
4g1m_A_1     338:ARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEG-------QWAARSMPPSFGYSMKGATDIDKNGYPDLIVGAFGVD: 430
SecStr          :S TTSEEEEEE TT SSS EEEEEETT SGGG  EEEEEEEETTEE SS SEEEE -------    SSS   TTSEEEEEE TT SSS EEEEEEGGGT:    
ExpBur          :bebbbbbbebebbbeeeeebbbbbbbbbbeeebbbbbbbbbeeebbeeeeebebeb-------eeeeeeeebbbbebbebebebbebebbbbbbbbbbbb:    

queryA       606:QMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQI--KSLIPQFQGRLVANLTYTLQLDGHRTR---RRGLFPGGR---HELRR: 697
                :  *    ***          *         **           *   *     *   *        *    * **        ** **   *   *    :
4g1m_A_1     431:RAILYRARPVITVNAGLEVYPSILNQDNKTCSLPGTALKVSCFNVRFCLKADGKGVLPR-----KLNFQVELLLDKLKQKGAIRRALFLYSRSPSHSKNM: 525
SecStr          :EEEEE B  EEEEEEEEEEE SEE TT   EE SSSS EE  EEEEEEEEEE SSS  S-----EEEEEEEEEESTTS SSS   EEETTT SSEEEEEE:    
ExpBur          :ebbbbbbbbbbebeeebebeeeebebeeeeeebeeeeeebbbbebebbbebebeeebee-----ebebebebebbeebeeeeeebbbbbeeebbeeeeeb:    

queryA       698:NIAVTTSMSCTDFSFHF--PVCVQDLISPINVSLNFSLWEEEGTPRDQR--AQGKDIPPILR---PSLHSETWEIPFEKNCGEDKKCEANLRVSFSPARS: 790
                : *     * *              *   **       *        * *  *      ***    *   *    *     ****  *   * **      :
4g1m_A_1     526:TISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRL--------DYRTAADTTGLQPILNQFTPANISRQAHILLD--CGEDNVCKPKLEVSVD-SDQ: 614
SecStr          :EEESSS  EEEEEEEEE  TTT    SS EEEEEEE  -------- TTTS  TT    EE TTS SEEEEEEEE  S-- TTTT     EEEEE -   :    
ExpBur          :ebeeeeeeeeeeeebbbeeeeebeeeeebbbbbbebeb--------eeeebeeeeebbbeeeeebeeeeeeebbbbee--beeeeebebebebebe-eee:    

queryA       791:RALRLTAFASLSVELSLSNLEEDAYWVQLDLHFPPGLSFRKVEMLKPHSQIPVSCEELPEESRLLSRALSCNVSSPIFKAGHSVALQMMFNTLVNSSWGD: 890
                :          *       *  * **   *    *    *  *           **    *      *   *    *  ***        *     *    :
4g1m_A_1     615:KKIYIGDDNPLTLIVKAQNQGEGAYEAELIVSIPLQADFIGV-VRNNEALARLSCAFKTENQ---TRQVVCDLGNPM-KAGTQLLAGLRFSVHQQSEMDT: 709
SecStr          :  EETTSEEEEEEEEEEEE SS BTTEEEEEE  TTEEEEEE-  S TTSB  EEEEE  TT---  EEEEEEETTB- TT EEEEEEEEEEE   SS S:    
ExpBur          :eebebbeebebebebebbbeeebbbebebbbebbeebeeebb-beeeeebeebebeeeeeee---eebbbbebeebb-eeeeeeebbbebbbebeeeeee:    
Contact         :                                                                                               bbbb 

queryA       891:SVELHANVTCNN: 902
                :**         *:
4g1m_A_1     710:SVKFDLQIQSSN: 721
SecStr          :EEEEEEEEE S :    
ExpBur          :bbebebebebeb:    


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