Protein Model on 3vi3_A_1_U_1 (TEMPLATE: 3vi3 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(ITAL_HUMAN) A 1 (A) polymer(polypeptide(L)) [601 aa] Integrin alpha-5 :ITA5_HUMAN
2 b U 1 (A) non-polymer(NAG) 2-acetamido-2-deoxy-beta-D-glucopyranose 672T 673Y(V) 674T(E) 730N 731F 732S (identity: 66.7 %/32.6 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:3vi3_A_1 identity=32.6%
queryA       353:GISADLSR-GHAVVGAVGAKDWAGGFLDLKADLQDDTF--------IGNEPLTPEVRA----GYLGYTVTWLP-SRQKTSLLASGAPRYQ-HMGRVLLFQ: 437
                :* **     *  * *  *   * *  *                         *          **** *     *   *     * *      * *    :
3vi3_A_1     167:GFSAEFTKTGRVVLGGPGSYFWQGQILSATQEQIAESYYPEYLINLVQGQLQTRQASSIYDDSYLGYSVAVGEFSGDDTEDFVAGVPKGNLTYGYVTILN: 266
SecStr          :TSEEEE TT  EEEEETTHHHHTBEEEEE HHHHHHH  TTSS    TT EE     GGG S  BTSSEEEE  SSSSS EEEEEEEEEETTEEEEEEE :    
ExpBur          :bebbbbbeebbbbbbbbbbbeebbbbbbbebebbeebbeeeebeeebeebbebeeeeeeeeebebbbbbbbbbbbeeeeebbbbbbbeeeeeebebbbbb:    

queryA       438:EPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGE------QRGGRVFIYQRRQLGFEEVSELQGDPGYPLGRFGEAITALTDI: 531
                :    *          * *  ****      **  **   **  ****          *  ***  *     * *    *        ****   * * * :
3vi3_A_1     267:----GSDIRSLYNFSGEQMASYFGYAVAATDVNGDGLDDLL-VGAPLLMDRTPDGRPQEVGRVYVYLQHPAGIEPTPTLTLTGHDEFGRFGSSLTPLGDL: 361
SecStr          :----SSS  EEEEEE SSTTS TTSEEEEE  SSSSS EEE-EEETT EEE TT  EEE  EEEEE B SS B SS SEEEE  STT  GGGEEEEEESS:    
ExpBur          :----beebeeeeebebeeeebbbbebbbbbbbbeeeeebbb-bbbbebeeebeeeeebbbbbbbbbbbeeebbeeeeeeebebeeeebebbbbbbebebb:    

queryA       532:NGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGI-QWFGRSIHGVKDLEGDGLADVAVGA--ESQMIVLSSRPVVDMVTLMSFS: 625
                :  **  *** ***      ** *  * *  ***   ***        *     **    *  ** * *  *  **        *   ** *         :
3vi3_A_1     362:DQDGYNDVAIGAPFGGETQQGVVFVFPGGPGGLGSKPSQVLQPLWAASHTPDFFGSALRGGRDLDGNGYPDLIVGSFGVDKAVVYRGRPIVSASASLTIF: 461
SecStr          :SSSSS EEEEEETT STTSS EEEEE EETTEE SS SEEE  SS   SS   TTSSEEESS  SSSS   EEEEEGGGTEEEEE B  EEEEEEEEEES:    
ExpBur          :beeeeebbbbbbbebbeeebbbbbbbbbbeebbeeeebbebebebeeeeeebebbebbbbeeebbebebbbbbbbbbbbbebbbbebbbbbebebebebe:    

queryA       626:PAEIPVHEVECSYSTSNKMKEGVNITICFQIKSLIPQFQGRLVAN---LTYTLQLDGHRTR---RRGLFPGGRHE-LRRNIAVTTSM--SCTDFSFHF--: 714
                :**     *  *  *         *   *           *  **     *  ****        ** **   *   *             *         :
3vi3_A_1     462:PAMFNPEERSC--SLEGNPVACINLSFCLNAS-------GKHVADSIGFTVELQLDWQKQKGGVRRALFLASRQATLTQTLLIQNGAREDCREMKIYLRN: 552
SecStr          :S EE TT   E--ESSSSEE EEEEEEEEEEE------- SSS SEEEEEEEEEETTTTTTTS   EEETTTSSSEEEEEEEEETT   EEEEEEEEE  :    
ExpBur          :eeebeeeeeeb--eeeeeebbbbebebbbebe-------beebeeebebebebebbeeeeeeeeebbbbeeeeebeeeeebebebeeeeeeeebebbbee:    
Contact         :                                                 bbb                                                

queryA       715:PVCVQDLISPINVSLNFSLWEEEGTPRDQRAQGKDIPPILRPSLHSET: 762
                :     *  ***   *****      * *           *** **   :
3vi3_A_1     553:ESEFRDKLSPIHIALNFSL--DPQAPVDSHG--------LRPALHYQS: 590
SecStr          : S  S  SS EEEEEEEEE-- SSS   SSS--------   EE TTS:    
ExpBur          :eeebeeeeeebbbbbebeb--eeeeeeeeee--------beebebeee:    
Contact         :               bbb                                                                                  


Input Residue Numbers for Focused Sites

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