Protein Model on 2vc2_A_1_O_1 (TEMPLATE: 2vc2 )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(ITAL_HUMAN) A 1 (A) polymer(polypeptide(L)) [452 aa] INTEGRIN ALPHA-IIB :ITA2B_HUMAN
2 b O 1 (B) non-polymer(180) 2-(S)-[N-(3-PYRIDYLSULFONYL)AMINO]-3-[[2-CARBONYL-5-[2-(PIPERIDIN-4-YL)ETHYL]-THIENO[2,3-B]THIOPHENEYL]AMINO]-PROPIONIC ACID 400R(F) (identity: 0.0 %/37.7 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:2vc2_A_1 identity=37.7%
queryA       396:TPEVRAGYLGYTVTW--LPSRQKTSLLASGAPRYQH-MGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGEQRG-: 491
                : **   ** ** *          *     ***      * *                   * *  ****      **  **   **  **** * * *  :
2vc2_A_1     227:NPEYFDGYWGYSVAVGEFDGDLNTTEYVVGAPTWSWTLGAVEILDS-----YYQRLHRLRGEQMASYFGHSVAVTDVNGDGRHDLL-VGAPL-YMESRAD: 319
SecStr          : GGGTT  BTSEEEEE  SS TTS EEEEEETTHHHHT EEEEE T-----T  EEEEEE SSTTS TTSEEEEE  SSSSS EEE-EEETT- EEEEGG:    
ExpBur          :eeebeebebbebbbebbbeeeeeeebbbbbbbbbbeebbbbbbbbe-----ebeeeeebebebeebebbbbbbbbbbbeeeeebbb-bbbbe-beeeeee:    
Contact         :    b                                                                                               

queryA       492:------GRVFIYQR----RQLGFEEVSELQGDPGYPLGRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGI: 578
                :      ***           **      * *   *  **** **  * *   **  * ** **       * *  * *   **   ***         * :
2vc2_A_1     320:RKLAEVGRVYLFLQPRGPHALGAPSLL-LTGTQLY--GRFGSAIAPLGDLDRDGYNDIAVAAPYGGPSGRGQVLVFLGQSEGLRSRPSQVLD-SPFPTGS: 415
SecStr          :GEEEE BEEEEE   SSS    S SEE-EE  STT--  BTSEEEEEE TT SSS EEEEEETT STTSSBEEEEE EETTEE SS SEEEE-  S TTS:    
ExpBur          :eeebbbbbbbbbbbeeeeeebeeeeee-bebeeee--bebbbbbbebebbbeeeeebbbbbbbebbeeeebbbbbbbbbeebbeeeeebebe-bebeeeb:    

queryA       579:QWFGRSIHGVKDLEGDGLADVAVGA--ESQMIVLSSRP: 614
                :  ** *  *  *    *  *  ***    *  *    *:
2vc2_A_1     416:A-FGFSLRGAVDIDDNGYPDLIVGAYGANQVAVYRAQP: 452
SecStr          : -BTSEEEEEE SS SSS EEEEEEGGGTEEEEEEE  :    
ExpBur          :b-bbebbebeeebeeeebbbbbbbbbeebebbbbbbee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123