Protein Model on 1pt6_B_1_F_1 (TEMPLATE: 1pt6 )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(ITAL_HUMAN) B 1 (B) polymer(polypeptide(L)) [195 aa] Integrin alpha-1 :ITA1_HUMAN
2 b F 1 (B) non-polymer(GOL) GLYCEROL 253P(R) 254D(G) 255A(V) 257K 277K(E) 278D(N) (identity: 16.7 %/28.3 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:1pt6_B_1 identity=28.3%
queryA       155:VDLVFLFDGSMSLQPDEFQKILDFMKDVMKKLSN--TSYQFAAVQFSTSYKTEFDFSDYVKRKDP-DALLKHVKHMLLLTNTFGAINYVATEVFREELGA: 251
                : * *   *** *  *        *  *  *         *   **       **    *        *  * *      * *         * * *  **:
1pt6_B_1       8:LDIVIVLDGSNSIYP--WDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLNKYSSTEEVLVAAKKIVQRGGRQTMTALGTDTARKEAFTEARGA: 105
SecStr          : EEEEEEE  TTS  --HHHHHHHHHHHHTTS BSTTSBEEEEEEESSSEEEEE TTT SSHHHHHHHHHT      SS  HHHHHHHHHHTTTSGGGT :    
ExpBur          :ebbbbbbbbbeebee--bebbbebbbebbeebebbeeebbbbbbbbbeeeebebebeeeeebeebbebbeebeeebbeebbbbebbbbbbeebbeeeebb:    

queryA       252:RPDATKVLIIITDGEATDSGNIDAA------KDIIRYIIGI-----GKHFQTKESQETLHKFASKPASE-FVKILDTFEKLKDLFTELQKKIYVIEGT: 337
                :*    **  * ****  *               * *  * *          *    *     ** *    *    *    *      *   *   * *:
1pt6_B_1     106:RRGVKKVMVIVTDGESHDNHRLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDEL-ALVTIVKTLGERIFALEAT: 202
SecStr          : TTS EEEEEEESS  TTGGGHHHHHHHHHHTTEEEEEEEE HHHHHHT   HHHHHHHHHHS SSHHHHEEEESSGG-GGGGGHHHHHHHHHH    :    
ExpBur          :eeeebbbbbbbbbbebebeeebeebbebbeeeebbbbbbbbbbebeeeeeeeeebbebbeebbbeebeebbbebeebe-bbeebbeebbeebeebeee:    
Contact         : bbb b                         bb                                                                   


Input Residue Numbers for Focused Sites

ex) 2,15,123